Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004300.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq9745 432 6e-118 >seq9745 Length=7305 Score = 432 bits (478), Expect = 6e-118 Identities = 544/752 (72%), Gaps = 6/752 (1%) Strand=Plus/Minus Query 1624 GCATTCTTTAAAGCCCAATTCTTGAGTGCAGCATTTTTCTCTTCATCCAAGAACTCTTTA 1683 ||||| | | |||||| ||| | || || || || ||||| || | ||||||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1684 TAACTTGAGTCAGGTCCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGA 1743 |||||||||| |||||||||||||| |||||||||||||| || |||||||||| || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1744 ACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAATTCCTTA 1803 | ||||| |||||| || |||| | ||||| || ||| ||||||||||||||||||| Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 1804 AAGTGCTTTAGGTAGTGGGGGTCTACGTCATCAATTACGTTATACCAGGCATCATTACTG 1863 || || |||| || | || || |||| |||||| ||||| |||||||||||||| || Sbjct 6668 AAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTG 6609 Query 1864 TAGACTTTTGGGCTAAGGTCTAGATGACCACACAGATAATTATGTGGTCCAAGTGATCTG 1923 || ||||||||| | || |||||| || | ||||| ||||| || | |||||| Sbjct 6608 TACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTA 6549 Query 1924 GCCCACATCGTCTTCCCAGTTCTACTGTCACCCTCGATCACTATACTTATGGGCCTTATA 1983 ||||| || || |||||||||||| ||||| || | |||||||| || || | | Sbjct 6548 GCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGA 6489 Query 1984 GGCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCACTCCTCAAGTTCTTCTGGAACT 2043 |||| | ||| |||||| || ||||| || || |||| || | ||| || || || Sbjct 6488 GGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACG 6429 Query 2044 TGATCGAATGAAGANNNNNNNNNNNNNNAAACATAAACCTCCATTGGAGGTGTAAAAATC 2103 | | |||| | ||||||| | | ||||| || ||| Sbjct 6428 TTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATC 6369 Query 2104 CTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTTCC 2163 |||| |||||| ||||| ||||| | | ||| | ||||||| ||| |||||||| Sbjct 6368 ATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCC 6309 Query 2164 CTAATTATTGCTAAAGCTGCTTCGGTTGAACCTGCATTTAAGGCCTCTGCTGCAGCATCA 2223 |||||||| |||| |||||| | || || | ||||| ||| ||||| | ||||| Sbjct 6308 CTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCA 6249 Query 2224 TTAGCTGTCTGTTGACCTCCTC------GTGCAGATCTTCCATCGATCTGAAACTCACCC 2277 ||||| | |||||||| |||| ||||||||||||||| ||||| || || ||| Sbjct 6248 TTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCC 6189 Query 2278 CAGTCGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAGCT 2337 || || || ||| | || ||||||||| || ||||| || | ||||||||| ||| || Sbjct 6188 CAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCT 6129 Query 2338 CCCTGGAAGTTTGGATGGAATTGGGTGGAGCT 2369 ||||| | |||||||||||| || || || || Sbjct 6128 CCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8632487983980