Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004356.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq9745 529 3e-147 >seq9745 Length=7305 Score = 529 bits (586), Expect = 3e-147 Identities = 699/955 (73%), Gaps = 26/955 (3%) Strand=Plus/Minus Query 1632 TTAA-AGCTGAATTCTTTTCTTCCTCCAAGAATTCTTTATATGATGATGTTGGG-CCTGG 1689 |||| ||||| ||||| ||||| || | || |||||||| ||| |||||| ||||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGA-GTTGGGTCCTGG 6769 Query 1690 ATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTGGT 1749 ||||||||||||||| || || || || ||||||| || || || || ||||| | | Sbjct 6768 ATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCT 6709 Query 1750 GTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGG 1809 || ||||| || |||| ||||||||||||||| ||||| || |||| ||| | || Sbjct 6708 ATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGG 6649 Query 1810 GTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTACACCTTTGGACTCAGATC 1869 || |||| |||||||||||| ||||| |||||||| ||||| ||||| || | ||| Sbjct 6648 ATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATC 6589 Query 1870 CAGATGACCGCACAGATAATTATGTGGGCCCAATGAACGCGCCCACATGGTTTTTCCTGT 1929 ||||||||| | ||||| |||||||| ||||| | ||||| || ||||| || || Sbjct 6588 ATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGT 6529 Query 1930 ACGACTCTCTCCCTCTATGACAATACTGATGGGTCTCCATGGCCGCGCACCGGCATGCCT 1989 | | ||| || |||| || ||||| || |||| |||| | || |||| | Sbjct 6528 TCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCAC 6469 Query 1990 TACATTATCAGCAGCCCCATTCTTCAAGT-TCTTTGGGAACTTGATCCAAATGATGAAAG 2048 || || || || ||| | |||| ||| ||| || | ||| | ||||| | | Sbjct 6468 AACGTTTTCTTCAACCC-AGTCTTGAAGAATCTCCGGTACGTTGTT--AAATG-TACTGG 6413 Query 2049 ATAAAAAAGGAGAACCAAAAACCTCTAAAGGAGGTGCA---AAAATCCTATCTAAATTAG 2105 ||| |||||||||| || | | | ||| || || || ||| |||| ||||||| Sbjct 6412 ATACAAAAGGAGAAACATATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAG 6356 Query 2106 CATTTAAATTATGAAATTGTAAAACAAAATCTTTAGGAGCTAACTCCTTAATTACAT-TA 2164 ||||||| ||||||| ||||| | ||||||| || | ||| |||||| | || Sbjct 6355 CATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA 6296 Query 2165 AGAGCCTCTGACTTACTGCCGCTGTTAAGTGCCTGGGCGTAAGCGTCATTGGCTGTCTGT 2224 || || ||| ||| || || || || | |||||| | ||||| || | ||| Sbjct 6295 AG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGT 6237 Query 2225 TGACCCCCTCTTG------CAGATCTTCCGTCGATCTGAAACTCTCCCCATTCGAGGGTG 2278 ||||||||||||| |||||||||| || ||||| || |||||||| || | || Sbjct 6236 TGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTA 6177 Query 2279 TCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTC 2338 ||||||| ||| ||||| || ||||| |||| ||||||||||||| ||||||| ||||| Sbjct 6176 TCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTT 6117 Query 2339 GGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAAGAATCTGTTATTCGTGCAG 2398 ||||||||||||| |||||||||||| || || | ||||||||||||||||||||||| Sbjct 6116 GGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCAT 6057 Query 2399 ACGTATTTCCCTTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGC 2458 ||| ||||||||||| |||||||||||||||||| |||| || | ||| ||| Sbjct 6056 GTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCT 5997 Query 2459 TCTCTGCAGATTTTGATATATTTTTTATTAGTTGGTGTCTCTAGGGCTTG--TAATTGGG 2516 |||||||| || ||||| ||||| || || ||| || | |||| ||| ||||| | Sbjct 5996 TCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--G 5939 Query 2517 AAAGTGCTTCTTCTTTGTTGAGAGAGCACTGTGGATAAGTGAGGAAATAATTTTT 2571 | || ||||| ||||| | |||||||| || ||||| || || ||| |||||| Sbjct 5938 AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8610296498160