Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004558.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq9745 466 3e-128 >seq9745 Length=7305 Score = 466 bits (516), Expect = 3e-128 Identities = 692/978 (71%), Gaps = 16/978 (2%) Strand=Plus/Minus Query 1615 CGAAGGTTGCATTTTTTAAAGCCCAGTTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGT 1674 ||||| ||||||| | | ||||||| || | || | ||||| || || || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1675 ATTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTT 1734 | |||||||| || |||||||||||||||||||| |||||| | ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1735 TAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGA 1794 ||| || || ||||| ||||| || |||| | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1795 ATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCAT 1854 |||| ||||| || |||| || | || || |||| ||||||||||||||||||||||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1855 CATTACTGTAAACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTATGTGGTCCCA 1914 |||| |||| |||||||| | || |||||| || || ||||| ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1915 ATGATCTGGCCCACATAGTCTTCCCCGTCCTACTGTCACCCTCAATTACTATACTTATGG 1974 ||||||| ||||| || || ||||| || ||| ||||| || | |||||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1975 GTCTCAGAGGCCGCGCAGCGGGACTGCAGACGTTCTCGGCAGCCCACGCTTCAAGTTCTT 2034 ||| |||||| | ||| || ||| ||||| || || |||| ||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2035 CTGGAACTTGGTCGAAAGAAGAAGATATAAAAGGTGAAACATAAACATCCATTGGAGGTG 2094 | || || | || || | | |||| |||||| |||||||| | | ||||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2095 TAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAATTGTAAAACAAAATCTTTGGGAG 2154 || ||| |||| ||||||| |||||| | ||||| ||||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2155 CTTTCTCCCTTAATATATTGAGGGCCTGAGCTTTGGACCCTGAATTGATTGCCTCGGCAT 2214 ||| ||||| | ||| | | ||| | ||| ||||| ||||| | || || || | Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2215 ATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCTGATCGTCCATCGACTTGGA 2268 | | || || || ||||| ||| |||| | || |||| |||||| | |||| Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2269 AAACTCCATGATCAATGACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCGCTTGAGC 2328 | |||| |||||| ||||||| || || || || || || || | | |||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAG---GAGC 6140 Query 2329 T---CTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGT 2385 | ||| ||||||| ||||| ||||||||||||| |||||||||||| || || | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2386 CGAAGAATCTATTGTTTTTGCATTGGAACTTTCCTTCGAACTGGATGAGCACATGCAAGT 2445 |||||||||| || || ||||| | |||| |||||||| ||||| ||||| || | Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2446 GAGGAGTCCCATCATCGTGAAGCTCTCTGCAAATTCTAATAAATTTTTTG--AAAGTGGG 2503 |||| || | || ||| ||||||||||| | || |||| ||| | ||| Sbjct 6019 GAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2504 TGTTTGGAGATTTAATAATTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCACTTGGGATA 2563 | ||| | || ||||||| || || || || ||||| || |||||||| | |||||| Sbjct 5959 TATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2564 AGTGAGAAAATAATTTTT 2581 || |||||| |||||| Sbjct 5901 TGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8632487983980