Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004569.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq9745 538 6e-150 >seq9745 Length=7305 Score = 538 bits (596), Expect = 6e-150 Identities = 719/999 (72%), Gaps = 12/999 (1%) Strand=Plus/Minus Query 1597 GAACAGTGGCTCGTAGAGGGTGACGAAGGTTGCATTCTTGAGAGCCCAATTTTTCAAGGA 1656 ||| | ||||| | |||| ||||| |||||| |||||||||| || | | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGC 6820 Query 1657 TATGtttttttCTTCGTCTAGATATTCCCTATATGAGGAGGTAGGTCCTGGATTGCAGAG 1716 | ||| || |||||||| ||| | || |||| ||| | |||||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1717 GAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTG 1776 |||||| ||||| || || ||||||| || || |||||| ||||| || | || || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1777 CCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTC 1836 ||| || || | |||||||||||||||||| || || ||||||||| |||| || |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1837 ATCAATGACGTTGTACCATGCATCATTACTGTATACCTTTGGGCTTAGGTCTAGATGTCC 1896 |||||||||||||||||| |||||||| |||| |||||||||| || ||| || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1897 ACATAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTGTTTTGCCTGTTCTGCTATC 1956 ||||| ||||| |||||||||| || || ||||| |||||||| || ||||| || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1957 ACCCTCAATGACAATACTATTAGGTCTCCATGGCCGCGCAGCGGAAGACACGACGTTCTC 2016 ||| || | || ||||| |||||| |||| | ||| || | ||| ||||| || Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2017 GGACACCCATACTTCAAGTTCATCTGGAACTTGATTAAAAGATGAAGATAAAAAGGGAGA 2076 ||||| ||| ||| || || || | ||||| | |||| ||| ||||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2077 AATATAAGGAGCCGGAGGCTCCTGAAAAATTCTATCTAAATTANNNNNNNNNNNATGAAA 2136 || ||| || || || |||| || || |||| |||||| |||||| Sbjct 6399 AACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAA 6340 Query 2137 TTGTAAAATATAATCTTTCGGTATTAATTCTTTAATGAT-TCTAAGAGCCTCTGACTTAC 2195 ||||| ||||||||| || | ||| |||| || |||||| || ||| ||| Sbjct 6339 ACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAG 6281 Query 2196 TGCCTGAGTTAAGAGCTGCGGCGTAAGCGTCATTGGCTGACTGCTGACCCCC------AC 2249 || || || || ||| | |||||| | ||||| || || || |||||||| | Sbjct 6280 ACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAG 6221 Query 2250 GTGCAGATCGTCCGTCGATCTGAAACTCACCCCAGTCGACGGTGTCTCCGTCCTTATCGA 2309 |||||||| ||| || ||||| || || ||||| || | || ||||||| ||| |||| Sbjct 6220 TTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGA 6161 Query 2310 CATAAGACTTGACATCTGAACTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTG 2369 ||| ||||| || | || ||||||||| ||||||| ||||||||||||||||||| || Sbjct 6160 TATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTG 6101 Query 2370 CCCTGCTTGGGGATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGAATTTCCCTTCAA 2429 |||| |||| || || || |||||||||| | ||| ||| || | |||||||| | Sbjct 6100 ACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGA 6041 Query 2430 ATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAGTTCTCTGCAAACTTTGA 2489 ||||||||||||| |||||| | ||||||| || || || ||||||||||| |||| Sbjct 6040 ATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGA 5981 Query 2490 TGTATTTTTTATTTGTTGGGGTTTCTAGGTTTT--TTAACTGGGAAAGTGCTTCTTCTTT 2547 ||||||| || ||| |||||| | |||||||| ||| | || || ||||| ||||| Sbjct 5980 TGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTT 5923 Query 2548 CGTTAAGGAGCACTTAGGATATGTGAGGAAATAAttttt 2586 || | ||||| | |||||||| || ||| |||||| Sbjct 5922 TGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8711743290480