Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004580.1 Length=2630 Score E Sequences producing significant alignments: (Bits) Value seq9745 98.7 2e-17 >seq9745 Length=7305 Score = 98.7 bits (108), Expect = 2e-17 Identities = 215/318 (68%), Gaps = 22/318 (7%) Strand=Plus/Minus Query 1553 CCTGGATTGCAAAGCACGATTGAAGGGATCCCTCCTTTAATTTGAACTGGTTTCCCGTAC 1612 |||||||||||||| | ||||| || ||||| ||||||| || || || || ||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1613 TTGCAATTTGACTGCCAGTC-TTTTTGGGCCCCAAGAAGCTCTTTCCAATGCTTTAGCTT 1671 | | ||| ||||||| || |||||| ||||| ||| || || ||| | || Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA-TTCCTTAAAAT------GTTT 6661 Query 1672 TAGGTATTGCGGTGCTACGTCATCAATGACGTTAT---AGGCAACATTATTCGAGTACAC 1728 || || |||| | |||| |||||||||||| | ||||| |||| || ||| Sbjct 6660 TAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTT---GTA--- 6607 Query 1729 TCGATTAT----TGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAAAGCACGAG 1784 || || | | | || || || | | |||||| ||||||||||| | | || Sbjct 6606 -CGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAG 6548 Query 1785 CCCACATCGTCTTGCCCGTTCTAGAATCACCTTCCACTATGAGACTAACTGGTCTTACAG 1844 |||| || || || || ||||||| |||||||| || | | ||| | |||| || Sbjct 6547 CCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAG 6488 Query 1845 GCCGCGCAGCGGGACCCA 1862 ||| | ||| || || || Sbjct 6487 GCCTCCCAGAGGCACTCA 6470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8229871026960