Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004582.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq9745 426 3e-116 >seq9745 Length=7305 Score = 426 bits (472), Expect = 3e-116 Identities = 548/759 (72%), Gaps = 12/759 (2%) Strand=Plus/Minus Query 1593 GAAGACTGCATTCTTAACTGCCCAGTTTTTTAGGGCTTGGTTCTTTTCCTCGTCCAGATA 1652 |||||||||||| | | |||||| || | ||| |||||| || ||||| ||| | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1653 TTCTTTATAAGATGAGTTTGGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTTT 1712 ||||||||| |||||| || || |||||||| |||||||||||||| || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1713 AATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAA 1772 || || || ||||| ||||| || | || | ||||| || |||| |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1773 CTCTTTAAAGTGCTTGAGGAAGTGCGGATCGACATCATCAATGACGTTATACCACGCATC 1832 || ||||| || || | | ||||||| || | |||||||||||| ||||| ||||| Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1833 ATTGCTGTAAACTTTGGGGCTTAAATCTAAATGACCGCATAAGTAATTATGAGGCCCTAA 1892 |||| |||| ||| ||||||| ||| ||||||||||||||||||| || || ||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1893 TGACCTAGCCCACATCGTTTTACCCGTACGACTGTCTCCCTCAATCACTATACTTTGAGG 1952 ||| |||||||| || ||||| || || | | || || || | |||||||| ||| Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1953 CCTCAGAGGCCGCGCAGCGGCATCCATGACATTCTCGGAGACCCACTCTTCAAGTTCTTC 2012 | |||||| | ||| |||| || || || || ||||| |||| ||| || Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2013 AGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCCAACGGAGGAG- 2071 || || | ||||| | | |||| ||||||||||||||| | | || || |||| Sbjct 6435 CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATA-TTGCA--GGTGGAGC 6379 Query 2072 --TGAAAATCCTATCTANNNNNNNNNNNNNNNNNTGATATTGAAAAATAAATTTTTCTGG 2129 ||| ||| |||| | ||| | | ||| | | | || ||| Sbjct 6378 CTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2130 GAGTTTTTCCCTTATTATAGCCATAGCTGCTTCTTTAGAACCTGCATTTAGGGCTTCTGC 2189 | |||||||||| ||||| | | |||||| |||||| || | ||||||||||||||| Sbjct 6318 GCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2190 AGCAGCATCATTAGCTGTCTGTTGACCTCCTC------TTGCAGATCTTCCATCGATCTG 2243 | |||||||||| | |||||||| |||| |||||||||||||||| ||||| Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2244 AAATGTGCCCCAGTCGATGTAATCTCCGTCCTTCTCGATGTAGGACTTAACATCAGAGCT 2303 ||| ||||| || || |||||||| ||||||||| || ||||| || | ||||| Sbjct 6198 GAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCT 6139 Query 2304 GGACTTAGCTCCCTGGAAGTTTGGATGGAATTGGGTGGA 2342 ||| ||| ||||||| | |||||||||||| || || || Sbjct 6138 GGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8591275224600