Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004583.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq9745 509 3e-141 >seq9745 Length=7305 Score = 509 bits (564), Expect = 3e-141 Identities = 706/984 (72%), Gaps = 12/984 (1%) Strand=Plus/Minus Query 1598 GAAGATTGCATTCTTTAAAGCCCAATTTTTGAGTGCAGAATTCTTCTCTTCATCCAAAAA 1657 ||||| |||||| | | |||||| || | || | ||||| ||||| || | ||| Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1658 CTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTT 1717 ||||||||| ||||| ||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1718 AATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAA 1777 || || || ||||| |||||| || |||| | ||||| || ||| |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1778 CTCCTTAAAGTGCTTTAGGTAATGCGGGTCGACGTCATCAATGACGTTAAACCAGGCGTC 1837 |||||||| || |||| ||| |||| || |||| |||||||||||| ||||||| || Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1838 ATTACTGTATACCCTTGGGCTCAGATCTAGATGTCCACACAGATAATTATGTGGACCTAA 1897 ||| |||| ||||||| | ||| ||| || || | ||||| ||||| ||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1898 TGATCTGGCCCACATCGTCTTCCCCGTCCTACTGTCACCCTCAATCACTACACTTATTGG 1957 |||||| ||||| || || ||||| || ||| ||||| || | |||| ||| || || Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1958 TCTATTGGCCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCATACTTCAAGTTCTTC 2017 || | | || | ||| |||||| || ||||| || || |||| ||| ||| || Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2018 TGGAACTTGATCGAAAGAAGAAGAGGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTG 2077 || || | | || | | || ||||||||||||||| || ||||| |||| Sbjct 6435 CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG 6376 Query 2078 AAAGATTCTGTCTAGATTTGCATTTAAATTATGAAATTGCAGCACAAAATCCTTAGGAGC 2137 || || | || | ||| |||||||| ||||||| | | | |||| || || Sbjct 6375 GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCG 6316 Query 2138 TAGTTCCTTAATGA-CTCTAAGAGCCTCCGACTTACTTCCCGCGTTAAGTGCTGCGGCGT 2196 | |||| |||| | ||||||| || | | ||| || | || || ||| | |||| Sbjct 6315 TTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2197 AAGCGTCATTGGCTGTCTGTTGCCCTCCTC------TTGCTGACCTTCCGTCGATCTGAA 2250 || | ||||| || | ||||| || |||| |||| || ||||| || ||||| | Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2251 ATTGCCCCCAGTCGAGAATGTCCCCGTCCTTCTCGATGTAGGATTTGACGTCGGAGCTGG 2310 ||| ||||| || | | || |||| ||||||||| || || || |||| |||||||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGG 6137 Query 2311 ATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGACCAAGTCGA 2370 ||||| ||||||||||||| ||||||||||||| ||||||| |||| ||||| | |||| Sbjct 6136 ATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGA 6077 Query 2371 AGAATCGCATATTCTGGCACTTGAATTTCCCTTCGAACTGGATGAGAACATGCAAGTGAG 2430 |||||| ||||| ||| || | ||||||||||| ||||| || || || | ||| Sbjct 6076 AGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAG 6017 Query 2431 GAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATATAtttttttGAAGTTGGGGTTT 2490 | || | ||| ||| |||||||| || | || ||||| || |||||| | Sbjct 6016 GTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTAT 5957 Query 2491 GTA--TATTTAATAATTGGGAAAGTGCTTCCTCTTTGGTGAGAGAACATTTGGGATAAGT 2548 || | || ||||||| || || ||||||||||| || ||||| || | |||||| || Sbjct 5956 TTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGT 5899 Query 2549 GATGAAATAGTTTTTGGAATAAAT 2572 | ||| ||||| ||| |||| Sbjct 5898 TAGAAAAATATTTTTAGAAGAAAT 5875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8603956073640