Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004607.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq9745 457 2e-125 >seq9745 Length=7305 Score = 457 bits (506), Expect = 2e-125 Identities = 684/973 (70%), Gaps = 8/973 (1%) Strand=Plus/Minus Query 1590 GAAGATCGCATTCTTTACTGCCCAGTTTTTTAGTGCGGTGTTCTTTTCCTCGTCTAGGAA 1649 ||||| ||||| | | |||||| || | || | |||||| || ||||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1650 TTCTTTATAACTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTT 1709 ||||||||||| |||||| || |||||||| ||||||||||| || ||||||||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1710 AATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAA 1769 || || || ||||| ||||| || | || | ||||| || |||| |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1770 CTCTTTAAAGTGTTTGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTC 1829 || ||||| ||||| | || |||| || |||| |||||||||||| |||||||| || Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1830 GTTACTGTAGACCTTGGGACTCAGATCCAGATGTCCGCACAAATAGTTATGTGGTCCCAG 1889 || |||| || || || | ||| ||| ||||| || || || ||||| || | Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1890 TGATCTAGCCCACATCGTCTTTCCCGTTCGACTATCTCCTTCAATTACTATACTCCGAGG 1949 |||||||||||| || || || || |||| | || ||||| | ||||||||| ||| Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1950 TCTAAGGGGCCGCGCAGCGGGATCGACAACGTTATCGATGGCCCAAACTTCAAGTTCTTC 2009 || | |||| | ||| || | |||||||| || |||| ||| ||| || Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2010 TGGAACTTGATCGAAAGAAGAAGGANNNNNNNNNNNNNTATAGGGAGCCGGTGGCTCCTG 2069 || || | | || | | | ||| || ||||| |||| Sbjct 6435 CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG 6376 Query 2070 AAAGATTCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGC 2129 || || | || | ||| |||||||| ||||||| ||| | ||||||| || Sbjct 6375 GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCG 6316 Query 2130 TAGTTCCTTAATGA-CTCTAAGAGCCTCTGATTTACTTCCTGCGTTAAGTGCTTCGGCGT 2188 | |||| |||| | ||||||| || ||| |||| || | || || ||||| |||| Sbjct 6315 TTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2189 AAGCGTCGTTGGCTGTCTGCTGTCCTCCTCTTG------CTGATCTTCCATCGATCTGAA 2242 || | || || || | || || || ||||||| | ||||||||||| ||||| | Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2243 ACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTAGGCCTTGACATCTGAGCTTG 2302 | |||||||| || | || || |||| ||| ||||| || | ||| || | ||||| | Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGG 6137 Query 2303 ATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCTGGTTGGGGATACCAGGTCGA 2362 ||||| ||||||| ||||| ||||||||||||| ||| |||||||| || || || |||| Sbjct 6136 ATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGA 6077 Query 2363 AGAATCTGTTATTCGTGCAGACGAATTTGCCCTCGAACTGGATGAGCACATGGAGATGAG 2422 ||||||||||||||||||| | | || || ||||| ||||| ||||| |||||| ||| Sbjct 6076 AGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAG 6017 Query 2423 GGCTCCCATCTTCGTGTAACTCTCTGCAGATTTTGATGTATTTTTTATTCGAGGGTGTGT 2482 | || | ||| || |||||||| || ||||||||||| || || || || | Sbjct 6016 GTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTAT 5957 Query 2483 TGATGGCTTGAATTTGGGAAAGTGCTTCCTCTTTAGTGAGTGAGCACTGTGGATAAGTGA 2542 | | | |||||| || || ||||||||||| || || ||||| || ||||| || | Sbjct 5956 TTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTA 5897 Query 2543 TGAAATAATTTTT 2555 ||| |||||| Sbjct 5896 GAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8613466710420