Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004608.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq9745 318 1e-83 >seq9745 Length=7305 Score = 318 bits (352), Expect = 1e-83 Identities = 667/978 (68%), Gaps = 36/978 (4%) Strand=Plus/Minus Query 1739 GCATTCTTTGA-AGCCCACTGTTTAAGCGCAGCATTGTTCTCTTCATCCAAGTACTCTTT 1797 ||||| | ||| |||||| |||| || || || || ||||| || | ||||||| Sbjct 6848 GCATT-TATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTT 6790 Query 1798 ATAGGAGGACTTGGGACCAGGGTTACACAGAAAGATGGTGGGGATACCACCTTTAATTTT 1857 ||| || ||||| || || || || || ||||| ||||| || || ||||||| || Sbjct 6789 ATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTA 6730 Query 1858 AGTGGGCTTCCCGTACTTGACGTTAGACTGCCAGTCTCTTTGCGCGCCCATGAATTCTTT 1917 | |||||| ||||| | ||| ||||||| || |||| || ||||||||||| || Sbjct 6729 AAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTT 6670 Query 1918 GAAATGTTTCAAATAATGTGGATCAACGTCATCGATGACGTTGTACCATGCCTCGTTAGA 1977 |||||||| |||||| | |||||||||| ||| |||||||||||||| || || || Sbjct 6669 AAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTT 6610 Query 1978 GTATGTTTTGTCGTTTAGATCCAAATGGCCGCAAAGATAATTATGAGGACCTATGGCACG 2037 ||| ||||| | ||| ||| |||| ||||| | ||||| || || |||| | | Sbjct 6609 GTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCT 6550 Query 2038 TGCCCACATGGTTTTACCCGTGCGACTATCTCCTTCAATAACTATACTAATAGGTCTATC 2097 ||||| || ||||| || || | | || ||||| | ||||||||| ||||||| | Sbjct 6549 AGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTG 6490 Query 2098 TGGCCGCGCGGCATCTCTCACA---TTTCTTTCAGCCCA----TGAAGAAATGTAGCTTG 2150 |||| | | | | |||||| ||| |||| |||| ||||| ||| | | Sbjct 6489 AGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAG-AATCT---CCG 6434 Query 2151 GAACCTTGTCGAATG-ACTCCAATGTAAAAGGCGACTCATA---TGCCTGTGTAGGCTCT 2206 | || |||| |||| ||| || |||||| || |||| ||| ||| || || Sbjct 6433 GTACGTTGTTAAATGTACT-GGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT-- 6377 Query 2207 GTGAATATCCGAGACAAATTACAATTTAAGTTATGAAATTGTAAAATGAAATCCTTAGGA 2266 ||||||| | ||||||| |||||| ||||||| ||||| |||| || || Sbjct 6376 -GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGG 6318 Query 2267 GCCTTTTCCTTCAATATAAGGAGGGCCTCCAACTTTGATCCAGAGTTGAGTGCCTCGGCG 2326 |||||| | | ||| | ||| | || || ||||| || || || || ||| Sbjct 6317 CGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2327 TATGCGTCGTTGGCAGATTGTTTACCTCCTC------TAGCTGATCTGCCATCGATTTGG 2380 || | || || || ||||||| ||| |||| | || ||||| ||||| || ||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2381 AAGGTTCCATGATCAAGAATGTCTCCGTCTTTCTCCATGTATGTTTTAACATCTGAGCAG 2440 || ||| ||||| | ||||||| ||||| || || | || || | |||| | Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2441 CTTTTAGCTCGCTGAATGTTCGGATGGTAATATGCCGATCTGCATCTGGAATGGAGGTCG 2500 |||| ||| ||| ||||| |||||| ||| || || ||| | || || ||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2501 AAGAACCTTTGGTTTTTCGT--TTGT-TGTTTCCCTTCGAACTGAAGCAGAACATGGAGA 2557 ||||| || ||| ||||| ||| | ||||||||||| || | || || |||||| Sbjct 6077 AAGAATCT---GTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGA 6021 Query 2558 TGAGGTTGTCCATCTTCATGGAGTTCTCGACAGATGCGGATGAACTTCTTGTTAACTGGT 2617 |||||| | | |||||| ||||| || || |||| | |||||||| ||||| Sbjct 6020 CGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGG 5961 Query 2618 GTTGACAAGGCTAGAAGTTGTTCA-AGAGCGTCCTCCTTTGTAAGAGGACATTTGGGATA 2676 || | | | ||| | || | ||||| ||||| |||||||||| || | |||||| Sbjct 5960 GTATTTAGGTTTTGAA-TAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2677 TGTCA-AGAAATAGTTTT 2693 ||| | | ||||| |||| Sbjct 5901 TGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8594445436860