Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004611.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq9745 421 1e-114 >seq9745 Length=7305 Score = 421 bits (466), Expect = 1e-114 Identities = 692/982 (70%), Gaps = 27/982 (3%) Strand=Plus/Minus Query 1593 GAAGACTGCATTCTTGATTGCCCACTGCTTCAGTGCTGCAtttttttCTTCATCCAGATA 1652 |||||||||||| ||| ||||| ||| | ||||| || || ||||| || ||| | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1653 TTCCTTATAGCTGCTGTTTGGACCTTTATTGCACAGGAAGATAGTGGGAATTCCACCTTT 1712 || ||||| || ||| || ||| |||||| |||||||| ||||| || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1713 AATCATGACCGGCTTTCCGTA-CTTCGTGTTGCTTTGGCAGTCACGCTGGGCCCCCATGA 1771 || | ||||||||||| |||| | || || || |||| | ||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1772 ATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTGTACCAGGCAT 1831 |||| ||||| || |||| ||| | |||||||||| ||||||||||||||||||||||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1832 CATTGCTATAGACCTTTGGGCTCAGATCAAGATGTCCACACAAGTAATTGTGTGGTCCTA 1891 ||||| | || |||||||| | |||| ||| || || |||||||||||||| |||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1892 AGCACCGAGCCCACATCGTTTTGCCCGTCCTACTATCCCCCTCTATGACTATGCTTATGG 1951 | | | |||||| || ||||| || || ||| || || |||| ||||| || || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1952 GCCTAAAAGGCCGCGCAGCGGCACACACAACATTAGACGAGACCCAATC--GACGAGGTC 2009 | | ||||| | ||| ||||| |||||| || ||||| || || || || Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGA-ATC 6438 Query 2010 TGCCGGAACTCTGTCGAAGGATGAAATTGA---AAATGGAGAAACATAAACCTCGGAAGG 2066 | |||| || ||| | ||| | | || ||| ||||||||||| | | | || Sbjct 6437 T-CCGGTACGTTGTTAA---ATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGG 6382 Query 2067 AGGTTGAAAAATACGATCTAAATTGGTATTTAAATTGTGAAACTGCAGAACGTAATCTTT 2126 || || || || ||| ||||| | |||||| | ||||| | | | |||||||| Sbjct 6381 AGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTT 6322 Query 2127 TGGGGCTAATTCCTTTAATA-CTCTCAAAGCATCGTCTTTATTTCCCGTGTTAATCGCCT 2185 |||| | |||| | | || |||| || || | |||| || | || | || | Sbjct 6321 TGGGCGTTTTTCCCTAATTATCTCT-AAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTT 6263 Query 2186 GGGCATATGCATCGTTCGCCGTTTGTTGACCACC------ACGGGCAGATCGTCCATCGA 2239 || || |||| || |||| ||||||||| || | ||||||| |||||| | Sbjct 6262 CTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCA 6203 Query 2240 TCTGGAAAACACCCCATTCTAGAACGTCTCCATCTTTGGCGATGTAGTTTTTGACGTCCG 2299 ||||||| | ||||| || | ||||| | || |||| || || |||| | Sbjct 6202 TCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGG 6143 Query 2300 ACGCT-GATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGACTTGGGGAAACC 2358 | ||| |||||| ||||||| ||||| ||||||||||||| ||||| |||| || || Sbjct 6142 A-GCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACA 6084 Query 2359 AAGTCGAAGAATCTGTTATTTTTGCACTGGAATTTCCCTTCGAATTGGATGAGAACATGG 2418 | ||||||||||||||||| |||| | | ||||||||||||||||| || || ||| Sbjct 6083 AGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGG 6024 Query 2419 ATATGCGGAGACCCATCTTCGTGAAGCTCTCTACAGATCTTGATGAATTTCTTCTTCGTC 2478 | | | || || | ||| ||| ||||| || ||||||||| ||||||| || Sbjct 6023 AGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACT 5964 Query 2479 GGGGTTTCTAGGGTTTG--CAATTGGGAGAGTGCCTCTTCTTTAGTTAGAGAGCACTTTG 2536 ||||| | |||| |||| |||| ||||| || || ||||| || |||||||| | | Sbjct 5963 GGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGG 5906 Query 2537 GATATGTGAG-GAAATAGTTTT 2557 ||||||| || ||||| |||| Sbjct 5905 GATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8575424163300