Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004613.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq9745 581 6e-163 >seq9745 Length=7305 Score = 581 bits (644), Expect = 6e-163 Identities = 732/997 (73%), Gaps = 20/997 (2%) Strand=Plus/Minus Query 1587 TGGCTCCGTGAGGGTGATGAATTCTGCATTCTTTACTGCCCAGTCTTTTAATGCTGAATT 1646 ||||| |||||| ||| ||||||| | | |||||| || | |||| || Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1647 CTTTTCCTCGTCCAAGTACTCTTTATACGATGATGTTGGG-CCTGGATTGCAGAGGAAGA 1705 ||| || ||||| | |||||||||| ||| |||||| ||||||||||| ||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGA 6755 Query 1706 TTGTTGGGATCCCACCTTTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAAT 1765 |||| || ||||| ||||||| || | |||||| ||||| || | || ||||||| Sbjct 6754 TTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAAT 6695 Query 1766 CTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAA 1825 | |||| ||||||||||||||| ||||| || |||| ||| | || || |||| ||||| Sbjct 6694 CACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAA 6635 Query 1826 TGACGTTGTACCATGCATCATTACTGTACACCTTTGGACTCAAGTCAAGGTGCCCACACA 1885 ||||||||||||| |||||||| ||||| ||||| || | ||| || || || | Sbjct 6634 TGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATA 6575 Query 1886 AATAATTATGTGGGCCTAAAGACCTGGCCCACATTGTCTTTCCTGTTCTGCTCTCTCCCT 1945 | ||||| ||||||||||| || || ||||| ||||| || || ||||| ||| || | Sbjct 6574 AGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTT 6515 Query 1946 CGATGACTATACTTTTGGGCCTCCAAGGCCGCGCAGCGGCATCCCTTACATTCTCGGACA 2005 | | |||||||| | || | ||||| | ||| |||| | || || || | Sbjct 6514 CTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAA 6455 Query 2006 CCCACTCTTCAAGTTCTTCTGGAACTTGATcaaaagaagaagaaagaaaaggacaaacaa 2065 |||| |||| ||| || || || | | ||| | | || | ||||||| ||||| Sbjct 6454 CCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACAT 6395 Query 2066 aaacctctaaaggaggtgca---aaaaTCCTATCTAAATTAGAATTTAAATTATGAAATT 2122 | | | ||| || || || ||| |||| ||||||| |||||| ||||||| Sbjct 6394 ATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAAC 6338 Query 2123 GTAAAACATAATCTTTGGGGGCTAATTCTTTAATTACAT-TAAGAGCCTCTGACTTACTT 2181 ||||| ||||||||| ||| | ||| |||||| | |||| || ||| ||| Sbjct 6337 GTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGAC 6279 Query 2182 CCGCTGTTAAGTGCTTTGGCGTAAGCGTCATTGGCTGTCTGTTGTCCTCCCCTTG----- 2236 || || || |||| |||||| | ||||| || | ||||| || || |||| Sbjct 6278 CCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTT 6219 Query 2237 -CAGATCTTCCATCGATCTGAAACTCGCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGA 2295 ||||||||||||| ||||| || || ||||| || | || ||||||| |||||| | | Sbjct 6218 GCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATA 6159 Query 2296 TAGGACTTAACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGAC 2355 || ||||| |||| ||||| |||||| ||||||| ||||| ||||||||||||| |||| Sbjct 6158 TACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGAC 6099 Query 2356 CTGGTTGGGGACACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAAC 2415 |||||||| || || || ||||||||||||||||||||||| |||| ||||||||||| Sbjct 6098 CTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAAT 6039 Query 2416 TGGATAAGCACGTGGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAAATTTTGATA 2475 |||||||||||||||||| |||| || | ||| ||| ||||||||||| ||||| Sbjct 6038 TGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATG 5979 Query 2476 TATTTTTTATTTGTTGGGGTTTGTAGGGTTTG--TAATTGGGAAAGTGCTTCTTCCTTTG 2533 ||||| || ||| |||||| | |||| |||| |||||| || || |||| || |||| Sbjct 5978 TATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTG 5921 Query 2534 TGAGTGAGCACTGGGGATATGTAAGAAAATAATTTTT 2570 | || ||||| ||||||||||| |||||| |||||| Sbjct 5920 TAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8603956073640