Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004614.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq9745 517 2e-143 >seq9745 Length=7305 Score = 517 bits (572), Expect = 2e-143 Identities = 709/991 (72%), Gaps = 6/991 (1%) Strand=Plus/Minus Query 1611 CGAAGATCGCATTCTTTAAAGCCCAATTCTTGAGTGCAGCATTCTTCTCTTCATCCAAGA 1670 |||||| ||||| | | |||||| ||| | || || ||||| ||||| || | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1671 ACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1730 |||||||||||||||| ||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1731 TAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGA 1790 ||| || || |||||||||||| || |||| | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1791 ATTCCTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCTATGATGTTGAACCAGGCCT 1850 |||||||||| || |||| || | ||||| |||| ||| |||| |||| ||||||| | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1851 CATTATTGTACACCTTTGGGCTAAGGTCTAGATGACCACACAAATAGTTATGCGGTCCCA 1910 |||| |||||| |||||||| | || |||||| || || || || || || || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1911 GTGATCTGGCCCACATCGTCTTCCCCGTTCGACTATCACCCTCTATCACTATACTTATGG 1970 |||||| ||||| || || ||||| |||| | ||||| |||| |||||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1971 GTCTTAAAGGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCATTCTTCAAGTTCCT 2030 ||| ||||| | ||| |||||| |||||||| || || |||| |||| ||| || Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2031 CCGGAACTTGATCAAAAGAAGATGAATTAAAAGGAGAAACATAAACCTCCACCGGAGGTG 2090 |||| || | | ||| | | || ||||||||||||||| | | |||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2091 TAAAAATCCTATCTAAATTAGCATTTAAATTATGAAACTGTAATACAAAATCTTTGGGAG 2150 || ||| |||| |||||||||||||| ||||||| |||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2151 CCTTCTCCCTTAAAATATTGAGGGCCGCAGCCTTGGACCCTGAATTGATTGCCTCGGCAT 2210 || ||||| | || | | ||| || | || ||||| ||||| | || || || | Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2211 ATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCTGATCTGCCATCGATCTGGA 2264 | | || || || ||||| ||| |||| | || ||||| ||||| ||||||| Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2265 AAACTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGACGCGC 2324 | |||| ||||||| ||||||| ||||| | ||| | || || | || | Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGG 6137 Query 2325 TCTTAGCTCCCTGAATGTTCGGATGGAAATTTGCTGACCTGGTTGTGGAAACCAGGTCGA 2384 ||| ||||||| ||||| |||||||||| || ||||||||||| || || || |||| Sbjct 6136 ATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGA 6077 Query 2385 AGAATCTGTTGTTCTGACACTTGAATTTTCCTTCGAACTGGATGAGCACGTGAAGATGAG 2444 |||||||||| ||| || || | || |||||||| ||||| |||||||| ||| ||| Sbjct 6076 AGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAG 6017 Query 2445 GTTCCCCATTTTCGTGCAGTTCCCGTGAAACGCGAATGAATAATTTATTAGTAGGTGTGG 2504 |||||| ||||| || ||| | ||| ||| || || || || || Sbjct 6016 GTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTAT 5957 Query 2505 CGAGGTTTTTTATTTGGGAAAGTGCCTCTTCTTTAGTAAGAGAACATTGTGGATATGTTA 2564 ||||||| || || || || || ||||| |||||||| || || |||||||||| Sbjct 5956 TTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTA 5897 Query 2565 AGAAATAATTTTTAGCATATATTTGGAAACG 2595 ||| |||||||| | | || | ||||| Sbjct 5896 GAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8645168833020