Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004618.1 Length=2787 Score E Sequences producing significant alignments: (Bits) Value seq9745 417 1e-113 >seq9745 Length=7305 Score = 417 bits (462), Expect = 1e-113 Identities = 692/988 (70%), Gaps = 22/988 (2%) Strand=Plus/Minus Query 1632 GGCTGGGTGAGCG-TGCAGAAGGCGGCATTCTTTAGAGCCCAGGCTTTCAGAGAGATATT 1690 ||||||||||| ||| |||| | ||||| | |||||||||| || | || || Sbjct 6872 GGCTGGGTGAGGAATGC-GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1691 CTTATCTTCGTCCAAGTATTCTTTATATGAAGACGTCGGCCCTGGATTGCACAGGAAGAT 1750 |||||||||||| | | |||||||| || | || ||||||||||| |||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGAT 6754 Query 1751 TGTCGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTA-CTTCGTGTTGCTTTGCCAGT 1809 ||| || || |||||||||| || || ||||| ||||| |||| | || ||||| | Sbjct 6753 TGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAAT 6695 Query 1810 CACGCTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTCATCAA 1869 ||| | |||||||||||| || ||||| || |||| |||| ||||||| |||| ||||| Sbjct 6694 CACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAA 6635 Query 1870 TGACGTTGTACCAAGCCGAATTGCTGTACACTTTTGGACTGAGGTCGAGATGTCCACACA 1929 ||||||||||||| || |||| ||||| |||||| || | || ||| || || | Sbjct 6634 TGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATA 6575 Query 1930 AATAATTGTGTGGTCCCAATGAACGGGCCCACATTGTCTTGCCCGTCCGACTATCACCCT 1989 | ||||||||||| || ||||| | ||||| ||||| || || || | | ||||| | Sbjct 6574 AGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTT 6515 Query 1990 CGACTATTATACTACTCGGCCTCCACGGCCGCGCAGCGGCATCCATCACGTTCGCCGATG 2049 | || | |||||| | || | |||| | ||| |||| || ||||| | Sbjct 6514 CTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAA 6455 Query 2050 CCCATCGTTGAAGTTCATCAGGAACCTGAGTGAAGG---AGGAAGCACAGAAGGGAGAAA 2106 |||| |||||| || || || | | || | ||| || || ||||||| Sbjct 6454 CCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACA---AAAGGAGAAA 6398 Query 2107 CATAAACCTCCGGAGGAGCTTGGAAGATCTTATCCAAATTAGCCTTGATATTATGATATT 2166 |||| | | || ||||| ||||| ||| ||||||||||||| || | ||||| | Sbjct 6397 CATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAAC 6338 Query 2167 G-AAATATATAATCTTTGGGGAGTTTCTCCTTAATAATAGCCAACGCAGCTTCAGCGGAA 2225 | ||||| ||||||||| ||| |||| ||| |||| || | || || ||| || Sbjct 6337 GTAAATA-ATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGAC 6279 Query 2226 CCTGCGTTTAACGCCTCGGCGGCTGCGTCATTAGCCTTATGGCAGCCGCCTC------TA 2279 || | |||| || || ||| | ||||||||| || || |||| | Sbjct 6278 CCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTT 6219 Query 2280 GCACTACGTCCGTCGACCTGGAACTCTCCCCACTCGATGCTATCACCGTCCTTCTCGATG 2339 ||| | ||| || | |||||| |||||||| || || |||| |||| ||||||||| Sbjct 6218 GCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATA 6159 Query 2340 TAGGACTTGACGTCGGAACACGACTTAGCTCCCTGAACGTTTGGATGGAAATGTGTTGAT 2399 || ||||| |||| ||| | || ||| ||||||| | ||||||||||||||||||||| Sbjct 6158 TACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGAC 6099 Query 2400 CGAGTTGGGGAGACCAGATCGAAGAATCGCTGATTTTGGCACTTGTATTTGCCCTCGAAC 2459 | ||||| ||||| ||||||||||||| | ||| ||| |||| || || ||||| Sbjct 6098 CTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAAT 6039 Query 2460 TGAATGAGGGCATGCAGATGAGGTTGCCCATCCTCGTGTAACTCACGACAAACTTTGATG 2519 || || || | || ||| |||||| || | || || || | |||| |||||| Sbjct 6038 TGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATG 5979 Query 2520 TATTTCTGGTTCGTGGGCGTGCGTAAGCTTCG--TAATTGGGAAAGTGCTTCCTCCTTCG 2577 ||||||| ||| || || || | || | ||||| || || |||||||| || | Sbjct 5978 TATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTG 5921 Query 2578 TGAGAGAGCACTGTGGATAAGTGAGGAA 2605 | |||||||| || ||||| || || || Sbjct 5920 TAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8727594351780