Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004625.1 Length=2802 Score E Sequences producing significant alignments: (Bits) Value seq9745 316 4e-83 >seq9745 Length=7305 Score = 316 bits (350), Expect = 4e-83 Identities = 692/1026 (67%), Gaps = 28/1026 (3%) Strand=Plus/Minus Query 1630 GAAGAGTGGCTCTGTGAGGGAGATGAAGAGCGCATTCTTGATTGCCCAATTCTTGAGATT 1689 ||| | ||||| |||||| | ||||| ||||| ||| ||||| ||| | | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGC 6820 Query 1690 GGAATTCTTGTCCTCGTCTAGGTATTCTTTATAGGACGAATTGGGGCCCGGATTGCATAA 1749 | ||||| || ||||| || | |||||||| || ||||| || |||||||| | Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1750 GAAGATGGTGGGAATCCCACCTTTAATTTGAATGGGCTTTCCGTATTTTGTGTTTGATTG 1809 |||||| ||||| ||||| ||||||| || || ||||||||||||| || | || | || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1810 CCAATCTCGTTGGGCCCCCATGAATTCTTTGAAATGCTTTAGATAATGCGGGTCTACGTC 1869 |||||| | || ||||||||||||||| || ||||| |||| |||| |||| || |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1870 GTCAATGACGTTGTACCATGCGTCGTTTGAATATATCTTGGGAGACAGATCCAGGTGTCC 1929 ||||||||||||||||| || || || || | || || | ||| || || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1930 ACATAGATAGTTATGTGGGCCCAGAGATCGGGCCCACATCGTCTTCCCGGTTCGGCTATC 1989 |||| || || |||||||| | |||| ||||| || || ||||| |||| || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1990 ACCTTCGAGAACAATACTGATCGGTCTCCATGGCCGCGCAGCGGGACGGCATATATTTTC 2049 |||||| | ||| ||||| || |||| |||| | ||| || || | ||||| Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2050 GGATACCCATACTTCTATTTCCTCTGGGACTTGCGTAAATGAGGATGATAAGAACGGACT 2109 ||||| ||| | ||| || || | |||||| |||| || ||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2110 AACGTAAGTTTGTGGCGGAGCCTGGAAGATTCGATCCGCGTTAGCAGATATGTTATGGAA 2169 ||| || || || ||||||||||| || |||| |||||| || |||| || Sbjct 6399 AACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAA 6340 Query 2170 CTGTaaaaaaaaGGACTTTGGATCCTTTTCTTTGATAATTTGAAGAGCTTCTGATTTAGA 2229 ||||| || | ||||| ||||| | || || | | ||| ||| |||||| Sbjct 6339 ACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGA 6280 Query 2230 AGAAGCATTCAACGCTTCTGCATATA---CCTGAGCTAAATGCTGGCCCTCCCCCCTG-- 2284 || ||| | |||||||| || | | | ||| | || || || ||| | || Sbjct 6279 CCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACC--CCCTCTTGTA 6222 Query 2285 ---GCACTTCTGGCATCGACTTGGAAAATTCCATCGTCAAGAAAT----TCCCCTCCCTT 2337 ||| ||| |||| | ||| ||||| || ||| ||| || || ||| Sbjct 6221 GTTGCAGATCTTCCATCCATCTGG--AATTC--TCCCCAATCAATTGTATCTCCGTGCTT 6166 Query 2338 TTCAATGTAAGCCTTGACATCGGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2397 || || || | ||| || | ||| |||||| ||||||| ||||| ||||||||||| Sbjct 6165 CTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATG 6106 Query 2398 TGTTGATCGGGATGGGGAAATGAGATCGAAGAATCTGGGGTTGGTACATTGGAACTTGCC 2457 |||||| | || ||| || | ||||||||||||||| || || ||| | |||| || Sbjct 6105 TGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCC 6046 Query 2458 TTCGAATTGGATGAGAACATGGAGATGAGGCACCCCATCCTGATGTAGTTCTCTGCAAAC 2517 |||||||||||| || || |||||| |||| ||| | | ||| ||||||||||| Sbjct 6045 TTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAAT 5986 Query 2518 CCTAATGAATTTGAT-ATTCGTCGGGTAAGAAATGGCTTT---TAATTGGGAAAGGGCCT 2573 | | ||| |||| | || | ||||| | || ||| ||||| || || || | Sbjct 5985 CTTGATGTATTTCTTGTTTACTGGGGTATTTA--GGTTTTGAATAATT--GAGAGAGCTT 5930 Query 2574 CTTCCTTTGCTAAG-GAGCATCGGGGATAGGTTATGAAATAATTTTTGGCATTTATTTGA 2632 | || |||| |||| ||||| ||||||| |||| ||| |||||| | | || || Sbjct 5929 CCTCTTTTG-TAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGA 5871 Query 2633 AAACGA 2638 |||||| Sbjct 5870 AAACGA 5865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8769553127050