Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004626.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq9745 587 1e-164 >seq9745 Length=7305 Score = 587 bits (650), Expect = 1e-164 Identities = 701/942 (74%), Gaps = 21/942 (2%) Strand=Plus/Minus Query 1632 TTAAT-GCTGAATTCTTTTCTTCGTCCAAGTACTCTTTATATGATGATGTTGGCCCTGGA 1690 ||||| |||| ||||| |||||||| | |||||||||| ||| | || |||||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGA 6768 Query 1691 TTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTATTTAGTG 1750 |||||||||||||| || || || || ||||||| || || || || |||||| | | Sbjct 6767 TTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTA 6708 Query 1751 TTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGG 1810 || ||||| || |||| ||||||||||||||| ||||| || |||| ||| | || Sbjct 6707 TTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGA 6648 Query 1811 TCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGACTCAGATCT 1870 || |||| |||||||||||| ||||| |||||||| |||| |||||| || | ||| Sbjct 6647 TCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCA 6588 Query 1871 AGATGACCGCACAAATAATTATGTGGTCCCAGTGACCTGGCCCACATTGTTTTACCAGTA 1930 ||||||||| || ||||| ||||| || | ||| || ||||| |||||||| ||||| Sbjct 6587 TAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTT 6528 Query 1931 CGACTATCACCTTCTATCACAATACTGATGGGTCTCCATGGCCGCGCAGCGGCAC-CACT 1989 | | |||||||||| || ||||| || |||| |||| | ||| ||||| ||| Sbjct 6527 CTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACA 6468 Query 1990 CACATTTTCAGAAACCCACTCTTCAAGTTCTTCCGGGACTTGATCAAATGAAGAAGATaa 2049 || ||||| |||||| |||| ||| ||||| || | | ||||| | |||| Sbjct 6467 -ACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATAC 6409 Query 2050 aaaaggacaaacaaaaacctctaaaggaggtgca---aaaaTCCTATCTAAATTAGCATT 2106 ||||||| ||||| | | | ||| || || || ||| |||| ||||||||||| Sbjct 6408 AAAAGGAGAAACATATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCATT 6352 Query 2107 TAAATTATGAAATTGTAAAACATAATCTTTAGGAGCTAACTCCTTAATTACAT-TAAGAG 2165 ||| ||||||| ||||| ||||||||| || | ||| |||||| | |||| | Sbjct 6351 TAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-G 6293 Query 2166 CCTCTGACTTACTGCCGCTGTTAAGTGCCTGGGCGTAAGCGTCATTGGCTGTCTGTTGTC 2225 | ||| ||| || || || || | |||||| | ||||| || | ||||| | Sbjct 6292 CTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGAC 6233 Query 2226 CTCCTCTTG------CAGATCGTCCATCGATCTGAAACTCACCCCATTCGAGGGTGTCTC 2279 | ||||||| |||||| |||||| ||||| || || ||||| || | || |||| Sbjct 6232 CCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTC 6173 Query 2280 CGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGAT 2339 ||| ||| |||||||| ||||| |||| ||||||||||||| ||||||| ||||| |||| Sbjct 6172 CGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGAT 6113 Query 2340 GGAAATGTGCTGACCTGGAAGGGGATACCAAGTCGAAGAATCTGTTATTCTGGCATTTGT 2399 ||||||||| |||||||| || || || | |||||||||||||||||| |||| ||| Sbjct 6112 GGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGT 6053 Query 2400 ATTTCCCTTCGAACTGCATAAGCACGTGGAGATGAGGGCTCCCATCTTCATGAAGCTCTC 2459 | ||||||||||| || ||||||||||||||| |||| || | ||||||| |||| Sbjct 6052 ACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTC 5993 Query 2460 TGCAGATTTTGATATATTTTTTGTTGGTTGGGGTGTTTAGGTTTTG--TAATTGGGAAAG 2517 |||| || ||||| ||||| ||||| |||||| ||||||||||| |||||| || || Sbjct 5992 TGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG 5933 Query 2518 TGCCTCTTCTTTAGTAAGAGAGCATTGTGGATAAGTGAGGAA 2559 | || ||||| ||||||||||| || ||||| || || || Sbjct 5932 --CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8581764587820