Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004627.1 Length=2734 Score E Sequences producing significant alignments: (Bits) Value seq9745 425 9e-116 >seq9745 Length=7305 Score = 425 bits (470), Expect = 9e-116 Identities = 586/812 (72%), Gaps = 17/812 (2%) Strand=Plus/Minus Query 1635 TTAAT-GCTGAATTCTTTTCTTCGTCCAAGTACTCTTTGTATGATGATGTTGGTCCTGGA 1693 ||||| |||| ||||| |||||||| | ||||||| || ||| | ||||||||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGA 6768 Query 1694 TTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTGGTG 1753 |||||||||||||| || || || || ||||||| || || || || ||||| | | Sbjct 6767 TTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTA 6708 Query 1754 TTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGG 1813 || ||||| || |||| ||||||||||||||| ||||| || |||| ||| | || Sbjct 6707 TTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGA 6648 Query 1814 TCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTACACCTTTGGACTCAGATCT 1873 || |||| |||||||||||| ||||| |||||||| ||||| ||||| || | ||| Sbjct 6647 TCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCA 6588 Query 1874 AGATGACCGCACAGATAATTATGTGGTCCCAGTGATCTGGCCCACATTGTTTTACCAGTA 1933 ||||||||| | ||||| ||||| || | |||||| ||||| |||||||| ||||| Sbjct 6587 TAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTT 6528 Query 1934 CGACTCTCTCCCTCTATGACAATACTTTTGGGTCTCCAAGGCCGCGCAGCGGCAC-CACT 1992 | | ||| || |||| || ||||| | |||| ||||| | ||| ||||| ||| Sbjct 6527 CTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCAC- 6469 Query 1993 CACATTTTCAGAAACCCACTCCTCAAGTTCTTCTGGAACTTGATCAAATGAAGAAGATAA 2052 || ||||| |||||| || | ||| || || || | | ||||| | |||| Sbjct 6468 AACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATAC 6409 Query 2053 AAAAGGACAAACAAATACCTCTAAAGGAGGTGC---AAAAATCCTATCTAAATTAGTATT 2109 ||||||| ||||| ||| | ||| || || || ||| |||| ||||||| ||| Sbjct 6408 AAAAGGAGAAACATATA---TTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATT 6352 Query 2110 TAAATTATGAAATTGAAAAATATATTCTTTTGGAAGTTTTTCCCTAATTATTGCCATTGC 2169 ||| ||||||| | ||| ||| |||||||| |||||||||||||||| | | || Sbjct 6351 TAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGC 6292 Query 2170 TGCCTCTTTCGAACCTGCGTTTAACGCTTCTGCAGCTGCATCGTTAGCCGTCTGTTGACC 2229 ||| ||| || || | |||| |||||||| |||| ||||||| |||||||| Sbjct 6291 TGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACC 6232 Query 2230 TCCTC------TAGCAGATCTTCCGTCGATCTGAAATACACCCCAGTCGACGTAATCACC 2283 |||| | ||||||||||| || ||||| ||| | ||||| || | ||| || Sbjct 6231 CCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCC 6172 Query 2284 GTCCTTCTCGATGTAGGACTTGACATCGGAACTGGACTTAGCTCCCTGGAAGTTTGGATG 2343 || ||||||||| || ||||| || | ||| ||||| ||| ||||||| | ||||||||| Sbjct 6171 GTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATG 6112 Query 2344 GAATTGTGTGGAGGT-GTTGGGGTGTGTAATGTCGAAGTGTCGACTATTCCTGAATTGGG 2402 ||| ||||| || | ||||| | | || |||||| || ||||| || || | Sbjct 6111 GAAATGTGTTGACCTGGTTGGAGAG-ACAAGATCGAAGAATCTGTTATTCGTGCATGTGT 6053 Query 2403 CTTTACCTTTGAATTGTATGAGCGCGTGGAGA 2434 || |||| |||||| || ||| |||||||| Sbjct 6052 ACTTCCCTTCGAATTGGATAAGCACGTGGAGA 6021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8559573102000