Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004628.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq9745 515 7e-143 >seq9745 Length=7305 Score = 515 bits (570), Expect = 7e-143 Identities = 679/940 (72%), Gaps = 18/940 (2%) Strand=Plus/Minus Query 1652 TTTTTCTCTTCGTCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAG 1711 || || |||||||| | ||||||||||| || || ||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1712 ATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAGTATTTGATTGCCAG 1771 || | ||| || || ||||||| || || ||||| |||||| | |||| | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1772 TCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCA 1831 || |||| ||||||||||||||||||||| || |||| || | ||||| |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1832 ATGACGTTGTACCAGGCGTCATTACTGTAGACCTTTGGGCTAAGGTCGAGATGTCCACAC 1891 ||||||||||||||||| ||||| |||| |||||||| | || ||| || || Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1892 AAATAGTTGTGTGGACCCAATGACCTGGCCCATATCGTCTTCCCCGTCCTACTCTCACCC 1951 || || |||||||| || ||||| || |||||||| || ||||| || ||| |||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1952 TCTATGACAATACTTATGGGTCTTAAAGGCCGCGCAGCGGCACCGAGAACATTCTCGGCA 2011 |||| || ||||| || |||| ||||| | ||| ||||| | ||| || || || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2012 GCCCACTCCTCAAGTTCCTCGGGAACTTGATCAAAAGANNNNNNNNNNNNAGGAGAAACA 2071 |||| || | ||| ||| || || | | ||| | |||||||||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2072 TAAACCTCCAAG-GGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTG 2130 || | | || | |||| || ||| |||| |||||||||||||| ||||||| | Sbjct 6395 TATA-TTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2131 TAAAACATAATCTTTGGGAGCTTTCTCCCTTAAAATATTGAGGGCCGAAGACTTGGACCC 2190 |||| ||||||||| || ||| ||||| | || | | ||| | | || ||||| Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCC 6277 Query 2191 TGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGC 2244 ||||| | || || || || | || || || ||||| ||| |||| | || Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2245 TGATCTGCCATCGATTTGGAAAACTCCAAAGTCAATGAAGTCTCCGTCTTTCTCCACATA 2304 ||||| ||||| || ||||| |||| | ||||| ||||||| ||||| | ||| Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2305 GGCTTTGACATCTGAAGAGCT---TTTAGCTCTCTGAATGTTCGGATGGAAATTTGCTGA 2361 | || || | | ||||| |||| ||| ||| ||||| |||||||||| || ||| Sbjct 6156 CGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Query 2362 CCGGGTTGGGGAAATAAGGTCGAAGAATCTGTTGTTTGTGCATTGGTATTTTCCCTCGAA 2421 || |||||| || | ||| |||||||||||||| || |||||| ||| || || ||||| Sbjct 6099 CCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAA 6040 Query 2422 TTGGATGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGCAATTCTCGACAAACCCTAAT 2481 |||||| |||||||| ||| ||||||||| || || || ||||| |||| | | || Sbjct 6039 TTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGAT 5980 Query 2482 AAATAATTTATTAACTGGGGTTTCCAAGTTCTG--TAATTGGGAAAGTGCCTCTTCTTTA 2539 || || || |||||||| | | ||| || ||||| || || || || ||||| Sbjct 5979 GTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTT 5922 Query 2540 GTAAGAGAGCAGTTGGGATATGTTAGGAAATAATTTTTAG 2579 ||||||||||||| |||||||||||| ||| |||||||| Sbjct 5921 GTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8622977347200