Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004634.1 Length=2731 Score E Sequences producing significant alignments: (Bits) Value seq9745 396 5e-107 >seq9745 Length=7305 Score = 396 bits (438), Expect = 5e-107 Identities = 678/978 (69%), Gaps = 19/978 (2%) Strand=Plus/Minus Query 1586 CGAAGATCGCATTCTTGAGAGCCCAATTCTTTAGTGCTGTGT-CTT-TCT-CGTCGAGGA 1642 |||||| ||||| |||||||||| ||| | |||| || ||| ||| |||| || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1643 ATTCTTTATAGCTGCTATTGGGACCAGGATTGCATAGGAAGATTGTCGGTATCCCGCCTT 1702 | |||||||| || ||||| || |||||||| ||||||||||| || |||||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1703 TAATTTGAACTGGCTTCCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGA 1762 ||| || || ||||| |||||| || | || | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1763 ACTCCTTAAAGTGCTTAAGAAAGTGCGGGTCGACGTCATCAATGACGTTGTACCATGCGT 1822 | |||||||| || || | | | |||| || |||| |||||||||||||||||| || | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1823 CGTTGCTGTAGACCTTTGGACTCAGATCTAGATGCCCACACAGATAGTTATGTGGGCCTA 1882 | ||| |||| ||||| || | ||| ||| || || | || || |||||||||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1883 GTGACCTGGCCCACATTGTCTTCCCGGTTCGACTATCTCCCTCGATGACTATACTTTGAG 1942 ||| || ||||| ||||| ||||| |||| | || || || | |||||||| || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1943 GTCTAAGGGGCCGCGCAGCGGCATCGACGACATTCTCGCACGCCCACGCTTCAAGTTCTT 2002 ||| | |||| | ||| |||| || || || || |||| ||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2003 CTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAATATATTCCTCTAGTGGAGGAG 2062 | || || | | || | | |||| ||||||||||| |||| | |||||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2063 TAAAAATCCTATCTAAATTACNNNNNNNNTTATGAAACTGTAAAACAAAATCTTTAGGAG 2122 || ||| |||| |||||| ||||||| ||||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2123 CCTTCTCCTTTAATATATTGAGGGCCGCTGCTTTGGACCCTGAATTGATTGCCTCGGCAT 2182 || ||| | | ||| | | ||| |||| ||| ||||| ||||| | || || || | Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2183 ATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCTGATCGTCCATCGACTTGGA 2236 | | || || || ||||| ||| |||| | || |||| |||||| | |||| Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2237 AAATTCCATGATCAAGGATGTCTCCGTCTTTCTTAATGTAGGTTTTGACATCGCTTGAGC 2296 | ||| ||||| | ||||||| |||| || || | || || | | |||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAG---GAGC 6140 Query 2297 T---TTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGGT 2353 | |||| ||||||| ||||||||||||||||||| ||||||| |||| || || | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2354 CAAAGAATCTGTTGTTTTGGCATTTGAATTTTCCTTCGAACTGGATGAGAACATGCAAGT 2413 | ||||||||||| || |||| || | || |||||||| ||||| || || || | Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2414 GAGGAGTCCCATTTTCATGAAGCTCTCTGCAGATTCTAATGAATTTTATG-GAAGTGGGG 2472 |||| || ||||||||| |||||||| || | ||| |||| || | ||||| Sbjct 6019 GAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2473 -GTTTGGAGATTTAAGAATTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCATTTGGGATA 2531 ||| | || || |||| || || || || ||||| ||||| ||||| | |||||| Sbjct 5959 TATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2532 AGTGAGGAAATAATTTTT 2549 || || ||| |||||| Sbjct 5901 TGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8550062465220