Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004635.2 Length=2608 Score E Sequences producing significant alignments: (Bits) Value seq9745 300 3e-78 >seq9745 Length=7305 Score = 300 bits (332), Expect = 3e-78 Identities = 659/973 (68%), Gaps = 41/973 (4%) Strand=Plus/Minus Query 1541 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAT 1600 || ||||||||||| | ||||| || ||||| ||||||| || || ||||| |||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1601 TTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTT 1660 | | ||| ||||||| || | | |||||||| | ||| || | || |||| Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA---- 6658 Query 1661 AGATATTGCGGTGCGACGTCATCAATGACGTTATATTCCA--CTTCATT-TGAAAAGACC 1717 ||| |||| | |||| |||||||||||| || ||| | ||||| | | | Sbjct 6657 --ATAACGCGGATCAACGTTATCAATGACGTTGTA--CCAGGCATCATTGTTGTACGTTT 6602 Query 1718 CGGGAATTGAAGTCTAAGTGTCCACTGAGATAATTGTGTGGGCCTAAGGCACGAGCCCAC 1777 || || | ||| || || | | ||||||||||||||||| | | |||||| Sbjct 6601 TTGGGCTTATATCATAA-TGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCAT 6543 Query 1778 ATCGTCTTCCCTGTCCTCGAGTCGCCTTCAATTATGATACTCACAGGCCTCTCCGGCCGC 1837 || || ||||| || || | || ||||| | | ||||||| ||| | | |||| | Sbjct 6542 ATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTC 6483 Query 1838 GCAGCGGCATCTGTTCCAAAATAACCGTCTGACCATGCTTGCATCTCGTCTGGAACGGCA 1897 ||| |||| | ||| | | || ||| |||| | || || ||| Sbjct 6482 CCAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTG 6426 Query 1898 TTGAAAGA---GGAGAGGGGAAACGGAGGAGACC---ATGGCTCC-GGAGCCTTAGCGAA 1950 || || | ||| | ||| |||| | || || || ||||||| ||| Sbjct 6425 TTAAATGTACTGGATAC---AAAAGGAGAA-ACATATATTGCAGGTGGAGCCTG---GAA 6373 Query 1951 TATCCTTTCTAAGTTGGCACGGATGTTATGATTCTGCAAAACGAAATCTTTTGGCTGTTC 2010 |||| | || || || ||| | ||||| | ||| |||||||||| ||| Sbjct 6372 TATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTT 6313 Query 2011 TTCTTTTAAAACCGCCATGGCAGATTCAACGGAATCTGCATTTAACGCCTTGGCATATGA 2070 ||| | | | | | | ||| | | || | | ||||| || | || || Sbjct 6312 TTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAAC 6253 Query 2071 ATCATTAGCAGACTGGCAGCCTCCTCTAGCACTT------CTGCCGTCGATCTGGAATTC 2124 ||||||||| || || || ||||| | | || || || || ||||||||||| Sbjct 6252 ATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTC 6193 Query 2125 TCCCCATTCCAGTGTATCTCCGTCCTTTGCGATGTAGGACTTGACGTCGGAGCTGGATTT 2184 |||||| || | ||||||||||| ||| |||| || ||||| |||| |||||||||||| Sbjct 6192 TCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTT 6133 Query 2185 AGCTCCCTGTATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGAGGCCAGATCGAAGAA 2244 | ||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| Sbjct 6132 ACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAA 6073 Query 2245 TCTGTTATTCTTGCATGCATATTTTCCCTCGAATTGCATGGGCACATGGAGATGAGGCTT 2304 |||||||||| |||||| || || || |||||||| || |||| |||||| |||| | Sbjct 6072 TCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTC 6013 Query 2305 CCCATTTTGATGGAGCT-CTCTGCAAATTTTGATGAACTTCTTATTCACTGGCGTGGAGA 2363 || |||| ||| |||| |||||||||| |||||| | ||||| || ||||| || | Sbjct 6012 CCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTA 5954 Query 2364 GGTTT--AGCAATTGGGAAAGTGCCTCTTCTTTGGTGAGGGAGCAGCCTGGATAAGTGAT 2421 ||||| | |||| || || || || ||||| || || |||||| ||||| || | Sbjct 5953 GGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAG 5896 Query 2422 AAAATAGTTTTTGGCATTTATTTTGAAACGTTTAATCGATGGCATTTTTGTAATAATAAG 2481 |||| ||||| | | || ||||| | ||| |||||| ||||||| | | | Sbjct 5895 AAAAATATTTTTAGAAGAAATGCGAAAACGAGAACTCGTTGGCATATTTGTAAGTAAATG 5836 Query 2482 GGGGTCACCGATT 2494 | |||||| ||| Sbjct 5835 GATGTCACCAATT 5823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8160126357240