Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004637.1 Length=2668 Score E Sequences producing significant alignments: (Bits) Value seq9745 248 1e-62 >seq9745 Length=7305 Score = 248 bits (274), Expect = 1e-62 Identities = 678/1014 (67%), Gaps = 56/1014 (6%) Strand=Plus/Minus Query 1522 GAGGAATATGAATTTAGCATTGTGGAGTGTCCACGACTTTAGACCTGCATTCTCTTCTTT 1581 ||||||| ||| ||||| ||| | ||| ||||| | | |||| |||| |||| Sbjct 6864 GAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTC 6805 Query 1582 GTCGAGGAATTCTTTATAACT-GACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGTA 1640 ||| || || ||||||||||| || | || |||||||| || | ||||| || | Sbjct 6804 GTCAAGAAACTCTTTATAACTTGAGTTGGGTCCT-GGATTGCAAAGGAAGATTGTGGGCA 6746 Query 1641 TTCCACCTTTAATTTGAACTGGCTTTCCGTAACTTAACAATTTGACTGCCAGTCTTTTTG 1700 | || ||||||| || || ||||||||||| ||| | ||| ||||||| || ||| Sbjct 6745 TCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTT--CTATTATACTGCCAATCACTTTT 6688 Query 1701 AGCACCAATCAGCTCCCTTCCAGTGCTTTAACTTTAGATATTGGGGTGTGACATCATCGA 1760 || || || | ||| || | || ||||| ||| | || || | ||| | Sbjct 6687 GGCCCCCATGAATTCC-TTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAA 6635 Query 1761 TGACGTTGTATTCCA--CTTCGTTTGAATAGACCTTAGAATTGAAGTCCAGATGTCCACT 1818 |||||||||| ||| | || || || || | | | || ||| || | Sbjct 6634 TGACGTTGTA--CCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1819 CAAGTAATTATGTGGGCCTAACGAACGAGCCCACATTGTCTTCCCTGTCCTTGAATCACC 1878 |||||||| ||||||||||| || | |||||| ||||| ||||| || || | ||||| Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1879 TTCGACTATCAAACTCATAGGTCTCAATGGCCGCGCAGCTGAACCCCTCCCAAAATAATC 1938 ||| || | | ||||||||||| |||| | ||| | || || ||| | || Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC---TCACAACGTTTTC 6460 Query 1939 GTCCGCCCACTCTTGCA---TCTCGACGGGAACGTTAGTGAAGGA---GGAAAGTGAAAA 1992 || |||| ||||| | |||| || ||||| | || | ||| | ||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCC---GGTACGTTGTTAAATGTACTGGATAC---AAA 6406 Query 1993 CGGCGGAG--TCCATGGCTCC-GGAGCCTTTAAGAAAATCCTATCTAAATTAGAATTTAG 2049 || | | | || || ||||||| ||| ||| |||| ||||||| ||||| Sbjct 6405 AGGAGAAACATATATTGCAGGTGGAGCCTG---GAATATCATATCCAAATTAGCATTTAA 6349 Query 2050 ATTGTGAAACTGAAAAAGATATTTCTCAGGCAACTTCTCCCTAATGATTTGGAGAGCCG- 2108 | ||||| | ||| ||| | | || || |||||||| || | | || | Sbjct 6348 TCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGC 6289 Query 2109 TGTGTTTATCCGGATCATTAAACGGCTCAGCTGCAGCGTCATTAGCTGTCTGTTGTCCTC 2168 ||| |||| | | ||| | | || || | | |||||||| | ||||| || | Sbjct 6288 TGT-TTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCC 6230 Query 2169 CCCTTGAACTT------CTTCCGTCGACCTGGAACTGTCCCCATTCCCACTGTATCTCCC 2222 | |||| | || ||||| || | |||||| | |||||| || | ||||||||| Sbjct 6229 CTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCA-ATTGTATCTCC- 6172 Query 2223 GTCCTTGTAAATGTATGACTTGACGTCGGAGCTCCATT-AGCTCC-TGTATGTTCGGATG 2280 || ||| | || || ||||| |||| |||||| ||| | |||| |||||||| ||||| Sbjct 6171 GTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATG 6112 Query 2281 GAAATGTGCTGACCTAGTTGGGGATACCAGGTCGAACAGTCGGTTATTTGTGACTTGGAT 2340 |||||||| |||||| ||||| || || || ||||| | || |||||| ||| | | Sbjct 6111 GAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTA 6052 Query 2341 TTTTCCTTCCAATTGCAACAAGATGTGGAGGTGAGGTTGCCCATCTTCATGAAGCTCTCT 2400 || ||||| ||||| | | | |||||| |||||| || | ||||||| ||||| Sbjct 6051 CTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCT 5992 Query 2401 GCATATTTTGATGAATTTCTTATT--GGAGGGTAATTGAATAGCTTG--CAATTGGGAAA 2456 ||| || |||||| ||||||| || ||||| || | ||| |||| || | Sbjct 5991 GCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTT--AGGTTTTGAATAATT--GAGA 5936 Query 2457 GTGCCTCCTCTTTTGTAAGAGGGCACTGTGGATATGTAAGGAAAATGTTTTTAG 2510 | || |||||||||||||||| ||| || |||||||| || ||||| ||||||| Sbjct 5935 GAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8350339092840