Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004638.1 Length=2582 Score E Sequences producing significant alignments: (Bits) Value seq9745 426 3e-116 >seq9745 Length=7305 Score = 426 bits (472), Expect = 3e-116 Identities = 719/1033 (70%), Gaps = 31/1033 (3%) Strand=Plus/Minus Query 1443 GAAGACCGCATTCTTGAGAGTCCAGTTTTTGAGAGACGCATTTTCTATTTTC-TCGAGGA 1501 |||||| ||||| |||||| |||| || | || || || | ||| ||| || || | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCT-TATCTTCGTCAAGAA 6797 Query 1502 AAGCTTTATAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTT 1561 | ||||||| || || || |||||||| || | ||||| || ||||| |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1562 TAATTTGAACGGGCTTTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAA 1621 ||| || || |||||||||||| | | ||| | |||||||| ||| |||||| | | Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1622 GTTCTTTCCAGTGCTTTAACTTTAGGTATTGCGGTGCGACGTCATCAATGACGTTATACT 1681 ||| || | || ||||| | | |||| | |||| |||||||||||| ||| Sbjct 6676 ATTCCTTAAAATGTTTTAAAT------AACGCGGATCAACGTTATCAATGACGTTGTACC 6623 Query 1682 CCACTCCATTCGAATAGACCCTAGAATTGAAATCGAGATGACCGCTCAAGTAATTATGTG 1741 | |||| || | | | | ||| |||||||| |||||||| |||| Sbjct 6622 AGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTG 6563 Query 1742 GGCCTAAGACCCGTGCCCACATCGTCTTGCCCGTTCGAGAGTCACCCTCAATTATGATAC 1801 ||||||| | ||||| || || || || |||| || ||||| || | | |||| Sbjct 6562 GGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATAC 6503 Query 1802 TAATAGGTCTCTCCGGCCGCGCAGCGGCACCCCTTCCGAAATAATTATCTGCCCACTCTT 1861 | ||||||| | |||| | ||| ||||| | || | | || |||| |||| Sbjct 6502 TCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACG---TTTTCTTCAACCCAGTCTT 6446 Query 1862 GCATCTCGTCAGGCACGTTAGTGAAAGAAGAGAGTTGAAACGGAGGAACCCACGGTTC-- 1919 | | || || ||||| | || | | | | ||| |||| ||| | | | Sbjct 6445 GAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAG 6386 Query 1920 -TGGAGCCTTGGTAAATATTTTAGCTGCGTTAGCAACAAGATTATGATGTTGAAGGAAAA 1978 |||||||| | ||||| || | |||||| | ||||| | | || Sbjct 6385 GTGGAGCCTGG---AATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAAT 6329 Query 1979 AGTGTTGTGGTTGTTCCTCCTTAATAATTTGCAGAGCTTCTGCGGCAGATGCAGCATTCA 2038 | | || ||| ||| ||| |||| || | | ||| ||| ||| ||| ||| | Sbjct 6328 AATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTA 6269 Query 2039 ACGCCTTGGCATATGTATCGTTAACTGACTGTTGACCTCCTCTAG------CAGATCTGC 2092 || | || || ||| ||| | || |||||||| ||||| | ||||||| | Sbjct 6268 GGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTC 6209 Query 2093 CGTCGATCTGGAATTCTCCCCATTCAACTGAATCTCCGTCCTTGTCGATATAGGACTTGA 2152 | || ||||||||||||||||| |||| || |||||||| ||| |||||||| ||||| | Sbjct 6208 CATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCA 6149 Query 2153 CGTCGGAGCTCGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGTTGACCTGGTTGGGG 2212 ||| |||||| |||||| ||||||||||||| |||||||||||||||||||||||||| | Sbjct 6148 CGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAG 6089 Query 2213 AGACCAGATCGAAGAATCTGTTATTCGTGCACTGATATTTACCTTCGAACTGGACAAGCA 2272 |||| |||||||||||||||||||||||||| || || |||||||| |||| ||||| Sbjct 6088 AGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCA 6029 Query 2273 CGTGGAGATGAGGTTCCCCATTCTCGTGCAATTCTCTGCAAATCTTGATGAATTTCTTGT 2332 |||||||| ||||||||| || || || ||||||||||||||||||| ||||||||| Sbjct 6028 CGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGT 5969 Query 2333 TAGTCGGAGTGTTTAGGTTTTG--TAGTTGGGAAAGTGCCTCCTCTTTGCTAAGAGAGCA 2390 | || || ||||||||||| || || || || || |||||||| |||||||||| Sbjct 5968 TTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCA 5911 Query 2391 TTTGGGATATGTGAGGAAATAGTTTTTAGAGTTAATTCTAAAGCG---TTTGGGTGGCAT 2447 | ||||||||| || ||| |||||||| ||| | ||| || | | |||||| Sbjct 5910 GTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGAGAACTCGTTGGCAT 5851 Query 2448 TTTTGTAA-TAAA 2459 ||||||| |||| Sbjct 5850 ATTTGTAAGTAAA 5838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8077700838480