Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004639.1 Length=2661 Score E Sequences producing significant alignments: (Bits) Value seq9745 230 4e-57 >seq9745 Length=7305 Score = 230 bits (254), Expect = 4e-57 Identities = 658/995 (66%), Gaps = 49/995 (5%) Strand=Plus/Minus Query 1540 GCATTGTGGAGTGTCCACGACTTTAGACCTGCATTCTCCTCTTTGTCGAGGAACTCTTTA 1599 ||||| ||| | ||| ||||| | | |||| |||| |||| ||| || ||||||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1600 TAACT-GACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGGATTCCACCTTTAATTTG 1658 ||||| || | || |||||||| || | ||||| || || || ||||||| || Sbjct 6788 TAACTTGAGTTGGGTCCT-GGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTA 6730 Query 1659 AACTGGCTTTCCGTACTTACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCTT 1718 || ||||||||||| | | ||| ||||||| || ||| || || || | ||||| Sbjct 6729 AAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTT 6670 Query 1719 CCAGTGCTTTAACTTTAGATATTGCGGAGTGACATCATCAATGACGTTATAATCCA--CT 1776 | || ||||| ||| ||||| || | |||||||||||| || ||| | Sbjct 6669 AAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTA--CCAGGCA 6618 Query 1777 TCGTTTGAGTAAACCCTATTAT--TGAAGTCCAGATGTCCACTTAAGTAATTATGTGGGC 1834 || || ||| | | || | | || ||| || | ||||||||| ||||||| Sbjct 6617 TCATTGTTGTA--CGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGC 6560 Query 1835 -TAATGCACGAGCCCACATCGTCTTTCCCTGTCCTTGAATCACCTTCCACTATCAAACTC 1893 ||||| | |||||| || || |||||| || || | |||||||| || | | |||| Sbjct 6559 CTAATGATCTAGCCCATATTGT-TTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTC 6501 Query 1894 ATAGGTCTCAATGGCCGCGCAGCGGAACCCCTCCCAAAATAATCATCCGCCCACTCTTGC 1953 ||||||| |||| | ||| || || || ||| | || || |||| ||||| Sbjct 6500 ATAGGTCGGTGAGGCCTCCCAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGA 6444 Query 1954 ATCTCGTCGGGAACGTTAGTGAAGGAGGAGAGTGGAAACGGAGGAACCCA-----CGGCT 2008 | || || ||||| | || | | | ||| |||| ||| | | | | Sbjct 6443 AGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGT 6384 Query 2009 CCGGAGCCTTTTTGAATAACTTCTGGACATGCGTTTGTACTTTATCCAGATGTAAGACGT 2068 ||||||| ||||| | | | | || | | || | ||| | | |||| | Sbjct 6383 --GGAGCCTG---GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAAT 6329 Query 2069 AATCCCTCGGTTGCTCTTCTTTCAAAATCTGCAATGCT--TGTTCCGCAGATTGAGCATT 2126 |||| | || | | ||| | | |||| || ||| |||| ||| || ||| Sbjct 6328 AATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTT--AGACCCAGAATT 6271 Query 2127 TAGAACTTTCGCATACGTATCGTTGGCAGTTTGGCAACCTCCTCTAG------CTGATCG 2180 ||| ||| || || ||| || || | ||| ||| ||||| | | |||| Sbjct 6270 TAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCT 6211 Query 2181 TGGATCGATTTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACGTATTTTTT 2240 | ||| || ||||| |||| ||||||| ||||||| ||||| | || || Sbjct 6210 TCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTT 6151 Query 2241 AACGTCTGACGAGCTC---TTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTGGA 2297 |||| | ||||| ||| ||||||| ||||| |||||||||||||||||||||| Sbjct 6150 CACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGT 6094 Query 2298 AGGGGAGACGAGGTCGAAGAACCTGTTGTTCTTGCAATTGTACTTCCCTTCGAACTGGAT 2357 || ||||| || |||||||| ||||| ||| |||| |||||||||||||||| ||||| Sbjct 6093 TGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGAT 6034 Query 2358 AAGCACGTGGAGGTGAGGGCTCCCATCTTCGTGCAATTCCCTTGAAACACGGATGAATTT 2417 |||||||||||| |||| || | ||| || ||| || ||| |||| |||| Sbjct 6033 AAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTT 5974 Query 2418 CTTACTGGTAGGGGTGTTCAACTCTTTCAAT-TGGGAAAGTGCTTCCTCTTTGGTCAAGG 2476 ||| | ||||| || | | ||| ||| || || ||||||||||| || | | Sbjct 5973 CTTGTTTACTGGGGTATTTAGGT-TTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAG 5915 Query 2477 AGCACTTGGGATATGTAAGAAAATAGTTTTTGGAA 2511 |||| | ||||||||| |||||| ||||| ||| Sbjct 5914 AGCAGTGGGGATATGTTAGAAAAATATTTTTAGAA 5880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8328147607020