Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004640.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq9745 208 1e-50 >seq9745 Length=7305 Score = 208 bits (230), Expect = 1e-50 Identities = 442/674 (66%), Gaps = 7/674 (1%) Strand=Plus/Minus Query 1708 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1767 |||||||||||| |||||||| ||||| || || ||||||| || || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1768 TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1827 | | | || ||||| || | | ||||||||||||||||||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1828 TTGGGGATTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTTTGGGCT 1887 | |||| |||| |||||||||||| ||||| ||| ||| ||||| ||||||||| Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1888 CAAGTCCAAATGACCACACAGATAATTATGTGGACCTAAAGACCGTGCCCAAACTGTTTT 1947 | || ||||||| || | ||||| ||||| ||||| || | ||||| | |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1948 ACCTATCCTACTTGGGCCTTCTATTACAATACTAATGGGCCTATCTGGCCGCGCAGCGGA 2007 || | ||| ||||||| || ||||| || || | | |||| | ||| || Sbjct 6534 CCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGC 6475 Query 2008 ATCCATGACATTTTCAGCGGCCCAGTCGCTGATAATGTCAGGTACATTATTGAAAGANNN 2067 | || || ||||| | ||||||| | ||| || ||||| || || || | Sbjct 6474 ACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACT 6415 Query 2068 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCTATCTAAATTACT 2127 || |||| |||||| Sbjct 6414 GGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGC 6355 Query 2128 ACGTAAATTATGATATTGAAAAATAAAATCTCTAGGGAGTTTCTCCCTAATTATTTGTAA 2187 | ||| ||||| | | ||| | ||||| | ||| |||| ||||||||||| | ||| Sbjct 6354 ATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAA 6295 Query 2188 TGCTGCTTCAGCAGAGCCTGCGTTTAAGGCCTCTGCTGCTGCATCATTAGCTGTCTGCTG 2247 |||||| ||| || | |||| ||| ||||| |||||||||| | || || Sbjct 6294 GGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTG 6235 Query 2248 ACCTCCTC------TAGCAGATCTTCCGTCGACTTGAAAAGTACCCCAGTCGATGTAATC 2301 ||| |||| | ||||||||||| || | || || ||||| || || ||| Sbjct 6234 ACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATC 6175 Query 2302 ACCGTCTTTCTCGATGTAGGACTTGACATCTGATGATGATTTAGCTCCCTGGAAATTTGG 2361 |||| |||||||| || ||||| || | || |||||| ||||||| | ||||| Sbjct 6174 TCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGG 6115 Query 2362 ATGGAATTG-GTTG 2374 |||||| || |||| Sbjct 6114 ATGGAAATGTGTTG 6101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8683211380140