Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004641.1 Length=2760 Score E Sequences producing significant alignments: (Bits) Value seq9745 414 2e-112 >seq9745 Length=7305 Score = 414 bits (458), Expect = 2e-112 Identities = 685/985 (70%), Gaps = 30/985 (3%) Strand=Plus/Minus Query 1608 CGAAGGTTGCATTTTTAATTGCCCAGGCCTTTAGGGCAGCATTCTTGTCCTCGTCTAAAT 1667 ||||| ||||||| | | ||||||| ||| | || || ||||| || ||||| | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1668 ACTCGGTGTATGATGACGTTGGG-CCTGGATTGCAGAGGAAGATTGTTGGGATACCACCT 1726 |||| | || ||| |||||| ||||||||||| ||||||||||| || || || ||| Sbjct 6796 ACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCT 6738 Query 1727 TTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATG 1786 |||| || || || || ||||| | | || ||||| || || | |||||||||| Sbjct 6737 TTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1787 AATTCCTTAAAGTGCTTTAGGTAGTGGGGATCCACGTCATCAATGACGTTGTACCAGGCC 1846 ||||||||||| || |||| || | ||||| |||| ||||||||||||||||||||| Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1847 TCGTTGCTGTAAATCTTGGGGCTTAAGTCAAGATGGCCGCAAAGGTAATTATGACGTGGA 1906 || ||| |||| | || ||||||| ||| ||| ||||| | |||||| | |||| Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGT---GTGGG 6561 Query 1907 CTAAGAGATCTGGCCCACATAGTTTTCCCTGTCCTGCTATCACCCTCTATCACAATACTC 1966 | | ||||| ||||| || |||||||| || || ||||| |||| || |||||| Sbjct 6560 CCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTC 6501 Query 1967 ATGGGCCTCCATGGCCGCGCAGAATCCCT---GACGTTCTCGGCAGCCCATTCCTCAAGT 2023 || || | |||| | |||| | || ||||| || || |||| || | ||| Sbjct 6500 ATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGA 6441 Query 2024 TGCTCCGGAACTTGATCAAAAGAAGACGATAAAAAAGGAGAAATAAATTCCTCCAACGGA 2083 |||||| || | | ||| | | |||| ||||||||||| | | | | || || Sbjct 6440 ATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATA-TATTGCA--GGT 6384 Query 2084 GGAGC---AAAAATCCTATCTNNNNNNNNNNNNNNNNNNTGAAATTGTAAAACAAAATCT 2140 ||||| || ||| |||| ||||| ||||| | ||||| Sbjct 6383 GGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCT 6324 Query 2141 TTGGGAGCTTTCTCCCTTAATATACAGAGTGCCGATGACTTAGATCCTGAGTTGATTGCC 2200 || || ||| ||||| | ||| | || | || ||||| || || || | || Sbjct 6323 TTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCT 6264 Query 2201 TCGGCATATGCGTCGTTGGCAGACTGGCAACCTCCTC------TAGCCGATCTTCCATCG 2254 || || || | || || || || || ||| |||| | || ||||||||||| Sbjct 6263 TCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCC 6204 Query 2255 ATTTGGAAAACTCCAAAATCAATGATGTCCCCGTCTTTTTCCATGTAGGTCTTGACATCT 2314 || ||||| |||| ||||||| | || |||| || || || || | ||| || | Sbjct 6203 ATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT-- 6146 Query 2315 GAAGAGCT---TTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGAT 2371 | ||||| |||| ||||||| ||||||||||||||||||| |||||||||||| || Sbjct 6145 -AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAG 6087 Query 2372 ACGAGGTCGAAGAATCGTTGATTTGTGCATTGGTATTTCCCCTCGAATTGGATGAGGATG 2431 || || |||||||||| | ||| |||||| ||| ||||| ||||||||||| || | | Sbjct 6086 ACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACG 6027 Query 2432 TGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAAATTCTGATGAATAATTTATTT 2491 |||||| |||| || | ||| ||| ||||||||||| ||||| || || ||| Sbjct 6026 TGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTT 5967 Query 2492 GTTGGAGTTTCTAGGGCTTTAAT--TTGGGTAAGAGCTTCCTCTTTAGTGAGCGAGCAGT 2549 ||| || | |||| || ||| ||| | |||||||||||||| || || ||||||| Sbjct 5966 ACTGGGGTATTTAGGTTTTGAATAATTGAG--AGAGCTTCCTCTTTTGTAAGAGAGCAGT 5909 Query 2550 GTGGGTATGTAACGAAATAATTTTT 2574 | || ||||| | ||| |||||| Sbjct 5908 GGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8641998620760