Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004642.1 Length=2593 Score E Sequences producing significant alignments: (Bits) Value seq9745 107 3e-20 >seq9745 Length=7305 Score = 107 bits (118), Expect = 3e-20 Identities = 207/306 (68%), Gaps = 6/306 (2%) Strand=Plus/Minus Query 1541 CCAGGATTGCAGAGCACGATTGACGGTATTCCCCCTTTAATTTGAACTGGCTTCCCGTAT 1600 || |||||||| || | ||||| || || || ||||||| || || ||||| |||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1601 TTGCAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAGCTCTTTCCAATGCTTCATCTTT 1660 | | ||| | ||||| || ||| |||||| || | || || |||| || | Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTT------T 6660 Query 1661 AAATATTGCGGAGTGATGTCATCAATGACGTTGTATTCCGCTTCATTTGAGTAAACCCTA 1720 ||||| ||||| | || ||||||||||||||| || ||||| ||| | Sbjct 6659 AAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTT 6600 Query 1721 GAATTGAAATCTAGGTGTCCACTCAAATAATTGTGTGGGCCTAAGGCACGCGCCCACATT 1780 | | | ||| || || | || ||||||||||||||||| | | ||||| ||| Sbjct 6599 GGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATT 6540 Query 1781 GTCTTTCCCGTCCTCGATTCACCCTCGATGATTATACTTATAGGTCTCTCCGGCCGCGCA 1840 || || || || || | ||||| || | | |||||| ||||||| | |||| | || Sbjct 6539 GTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCA 6480 Query 1841 GCGGCA 1846 | |||| Sbjct 6479 GAGGCA 6474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8112573173340