Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004645.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq9745 102 1e-18 >seq9745 Length=7305 Score = 102 bits (112), Expect = 1e-18 Identities = 240/360 (67%), Gaps = 12/360 (3%) Strand=Plus/Minus Query 1486 GCATTTTTTAATGTCCAGGCCTT--TAG-TGCGGTATTTTCCGCTTTGTCCAGGAAATCT 1542 |||||| | | | ||||| ||| ||| |||| | || || || ||| || || ||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATC---TTCGTCAAGAAACTCT 6792 Query 1543 TTATAGCTGGCCCCCTCGCCTGGATTGCACAGCACGATTGACGGGATCCCACCTTTAATT 1602 ||||| || | ||||||||||| || | ||||| || ||||| ||||||| | Sbjct 6791 TTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACT 6732 Query 1603 TGAACCGGCTTTCCATATTTACAGTTGGATTGCCAGTCTCTCTGGGCCCCAATCAATTCT 1662 | || |||||||| ||| | | || | ||||| || || | |||||| || ||||| Sbjct 6731 TAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCC 6672 Query 1663 TTCCAATGCTTTAGCTTTAGGTATTGCGGAGCGACGTCATCGATGACGTTATACTCGGCA 1722 || ||| | |||| || ||||| | |||| ||| |||||||| ||| |||| Sbjct 6671 TTAAAAT------GTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1723 TCGTTCGAGAAAACCCTAGAATTGAAATCAAGGTGCCCACTGATATAGTTATGACGCCCT 1782 || || | | | | | | |||| || || | | || || || | ||| Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCT 6558 Query 1783 AGGGCACGAGCCCACATTGTCTTGCCGGTTCTAGAATCACCCTCTACTATTATACTTATA 1842 | | | |||||| ||||| || || ||||||| ||||| ||||| | |||||| ||| Sbjct 6557 AATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATA 6498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8172807206280