Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004647.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq9745 524 1e-145 >seq9745 Length=7305 Score = 524 bits (580), Expect = 1e-145 Identities = 723/1008 (72%), Gaps = 40/1008 (4%) Strand=Plus/Minus Query 1608 CGAAGATCGCATTCTTGAGTGCCCA--ATTTCTTAG-TGCGGAATTCTTTTCTTCGTCCA 1664 |||||| ||||| |||| ||||| | || ||| |||| ||||| |||||||| | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCG---TTCTTATCTTCGTCAA 6800 Query 1665 AGAACTCTTTATAGCTGGAGTTGGGCCCTGGATTGCATAGGAATATAGTGGGAATGCCTC 1724 ||||||||||| || |||||||| ||||||||||| ||||| || ||||| || || | Sbjct 6799 GAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGC 6740 Query 1725 CTTTAATTTGAACTGGCTTTCCGTATTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCA 1784 |||||| || || |||||||||||| | |||| ||||| || |||| |||||||| Sbjct 6739 CTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCA 6680 Query 1785 TGAACTCTTTAAAGTGCTTCAAATAATGCGGATCGACATCATCAATGACGTTATACCATG 1844 |||| || ||||| || || |||||| ||||||| || | |||||||||||| ||||| | Sbjct 6679 TGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGG 6620 Query 1845 CGTCATTTGAATACACTCTTGGGCTTAAGTCCAAATGGCCGCACAAGTAATTGTGTGGGC 1904 | ||||| ||| | ||||||||| || |||| ||||| |||||||||||||||| Sbjct 6619 CATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGC 6560 Query 1905 CGATGGACCTAGCCCACATTGTTTTGCCCGTACGACTATCACCCTCAACAATAATTCCTA 1964 | | || |||||||| |||||||| || || | | ||||| || |||| || | | Sbjct 6559 CTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCA 6500 Query 1965 TGGGTCTTATAGGCCGCGCAGCGGCACTGACAACGTTAATCGCCGCCCACTCTTCAAGTT 2024 | |||| ||||| | ||| |||||| |||||||| | |||| |||| ||| Sbjct 6499 TAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAA 6440 Query 2025 CATCAGGAACTTGATCAAAAGAA---GAAAGAGNNNNNNNNNNNNTATAAACCTCCACTG 2081 || || || | | ||| | | || | | | |||| | | || Sbjct 6439 TCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGG---------AGAAACATATATTG 6389 Query 2082 GAGGTGTA------AAGATCCTATCTAAATTAGCATTTAAATTATGAAACTGTAATACAT 2135 ||||| | || ||| |||| |||||||||||||| ||||||| |||| || Sbjct 6388 CAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAAT 6329 Query 2136 AATCTTTGGGAGCTTTCTCCCTTAAAATATTGAGTGCCGATGATTTAGACCCTGAATTGA 2195 ||||||| || ||| ||||| | || | | || | || ||||||||| ||||| | Sbjct 6328 AATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTA 6269 Query 2196 TTGCCTCGGCATATGCGTCGTTTGCAGACTGGCAACCTCCTCTAG------CTGATCTTC 2249 || || || || | || || || || || ||| ||||| | | ||||||| Sbjct 6268 GGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTC 6209 Query 2250 CATCGACTTGGAAAATTCCAAAATCAAGGACGTCTCCGTCTTTTTCCATATAGGATTTGA 2309 |||| | ||||| ||| |||||| ||||||| || || ||||| || || | Sbjct 6208 CATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCA 6149 Query 2310 CATCCGACGAGCT---TTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCGGGTTG 2366 | | | ||||| |||| ||||||| ||||||||||||||||||| ||| | ||||| Sbjct 6148 CGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTG 6092 Query 2367 GGGATACCAAGTCGAAGAATCTGTTGTTTTGACATTTGAATTTTCCTTCGAATTGGATGA 2426 | || || | |||||||||||||| || ||| || | || |||||||||||||| | Sbjct 6091 GAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAA 6032 Query 2427 GCACGTGTAGATGAGGTTCCCCATTATCGTGTAATTCTCTGCAAATTCTTATGAATAATT 2486 ||||||| ||| ||||||||| || || || |||||||||||| | ||| || | Sbjct 6031 GCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCT 5972 Query 2487 TGTTTGTTGGAGTATTTAGATTTTG--TAATTGGGAAAGTGCTTCTTCTTTTGTAAGAGA 2544 ||||| ||| |||||||| ||||| |||||| || || |||| |||||||||||||| Sbjct 5971 TGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGA 5914 Query 2545 ACACTGAGGATATGTTAGAAAATAATTTTTTGCAAATATTTGAAAACG 2592 || || ||||||||||||||| |||||| | | | || ||||||| Sbjct 5913 GCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8629317771720