Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004648.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq9745 562 5e-157 >seq9745 Length=7305 Score = 562 bits (622), Expect = 5e-157 Identities = 703/952 (74%), Gaps = 23/952 (2%) Strand=Plus/Minus Query 1634 TTAAT-GCTGAATTCTTTTCCTCATCCAAGTACTCTTTATATGATGACGTTGGG-CCTGG 1691 ||||| |||| ||||| || || || | |||||||||| ||| |||||| ||||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGA-GTTGGGTCCTGG 6769 Query 1692 ATTGCAGAGGAAGATAGTTGGGATGCCACCTTTAATTTGAATTGGCTTCCCGTACTTAGT 1751 |||||| |||||||| || || || || ||||||| || || ||||| ||||| | | Sbjct 6768 ATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCT 6709 Query 1752 GTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGG 1811 || ||||| || |||| ||||||||||||||| ||||| || |||| ||| | || Sbjct 6708 ATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGG 6649 Query 1812 ATCAACGTCATCAATGACGTTATACCACGCGTCATTGCTGTACACCTTTGGACTCAGATC 1871 |||||||| |||||||||||| ||||| || |||||| ||||| ||||| || | ||| Sbjct 6648 ATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATC 6589 Query 1872 TAGATGACCGCACAGATAATTATGTGGGCCCAACGAACGGGCCCACATTGTCTTTCCTGT 1931 ||||||||| | ||||| |||||||| || || | ||||| ||||| || || || Sbjct 6588 ATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGT 6529 Query 1932 ACGACTCTCTCCCTCTATGACAATACTATTGGGTCTCCAAGGCCGCGCAGCGGCATCCCT 1991 | | ||| || |||| || ||||| | |||| ||||| | ||| |||| | Sbjct 6528 TCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCAC 6469 Query 1992 GACGTTCTTAGAAACCCACTCTTCAAGT-TCTTCGGGAACTTGATCGAAAGAAGAAGAAA 2050 ||||| | |||||| |||| ||| ||| ||| | ||| | || | | || | Sbjct 6468 AACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTA-AATGTACTGGATA 6410 Query 2051 GAAAAGGACAAACAAAAACCTCTACAGGAGGTGCA---AAAATCCTATCTAAATTAGAAT 2107 ||||||| ||||| | | | |||| || || || ||| |||| ||||||| || Sbjct 6409 CAAAAGGAGAAACATATAT---TGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCAT 6353 Query 2108 TTAAATTATGAAATTGTAAAACAAAATCTTTAGGAGCTAACTCCTTAATTACAT-TAAGA 2166 |||| ||||||| ||||| | ||||||| || | ||| |||||| | |||| Sbjct 6352 TTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG- 6294 Query 2167 GCCTCTGACTTACTGCCGCTGTTAAGTGCCTGTGCGTAAGCGTCATTGGCTGTCTGTTGA 2226 || ||| ||| || || || || | ||||||| | ||||| || | |||||| Sbjct 6293 GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGA 6234 Query 2227 CCCCCTCTTG------CAGATCTTCCGTCGATCTGAAACTCTCCCCAATCGAGGGTGTCT 2280 |||||||||| |||||||||| || ||||| || ||||||||||| | || ||| Sbjct 6233 CCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCT 6174 Query 2281 CCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGA 2340 |||| ||| ||||| || ||||| |||| ||||||||||||| ||||||| ||||| ||| Sbjct 6173 CCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGA 6114 Query 2341 TGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAAGAATCTGTTATTCTTGCACTGG 2400 |||||||||| |||||||||||| || || | |||||||||||||||||| |||| | Sbjct 6113 TGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTG 6054 Query 2401 TATTTCCCTTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCT 2460 || ||||||||||| |||||||||||||||||| |||| || | ||| ||| ||| Sbjct 6053 TACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCT 5994 Query 2461 CTGCAGATTTTGATATATTTCTTGTTGGTTGGGGTGTTTAGGTTTTG--TAATTGGGAAA 2518 ||||| || ||||| ||||||||||| |||||| ||||||||||| ||||| || | Sbjct 5993 CTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGA 5936 Query 2519 GTGCATCTTCCTTAGTGAGAGAGCACTGTGGGTATGTGAGGAAGTAATTTTT 2570 | || || || || || |||||||| || || ||||| || || |||||| Sbjct 5935 GAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8622977347200