Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004650.1 Length=2828 Score E Sequences producing significant alignments: (Bits) Value seq9745 343 3e-91 >seq9745 Length=7305 Score = 343 bits (380), Expect = 3e-91 Identities = 533/765 (70%), Gaps = 8/765 (1%) Strand=Plus/Minus Query 1764 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTCGAACTGGCTTTCCGTA 1823 |||||||||||| |||||||| ||||| || || ||||||| | || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1824 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1883 | | | || | ||||| || | | ||||||||||||||||||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1884 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTTTTGGGCT 1943 | || | |||| |||||||||||| ||||| ||| ||| |||| ||||||||| Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1944 TAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTGTTTT 2003 || ||| |||| || || || |||||||| ||||| || || || ||||||| |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 2004 GCCTATTCT-GCTTGGGCCTTCAATAACAATGGAAATGGGTCTATCCGGCCGCGCAGCGG 2062 || |||| || | ||||| | ||| || || |||| | |||| | ||| || Sbjct 6534 CCCAGTTCTAGCCT-CACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGG 6476 Query 2063 AATCCATGACATTTTCAGCGGCCCAGTCGCTGATAATGTCAGGAACGGCATTGAAAGAAG 2122 | || || ||||| | ||||||| | ||| || || ||| || || | | Sbjct 6475 CACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTAC 6416 Query 2123 AAGACGAAAAAGGGGAAGAATATACAGAAGGTGGAGGAGAAAAAATCCTATCTANNNNNN 2182 || |||||| ||| ||||| | |||||||| || ||| |||| | Sbjct 6415 TGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG 6356 Query 2183 NNNNNNNNNNNTGAAATTGAAATAAATATTTTTCAGGGAGTTTCTCCCTGATTATTTGCA 2242 ||||| | || |||| | || ||| |||| ||||| ||||| | | Sbjct 6355 CATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA 6296 Query 2243 ACGCAGCTTCTTTAGAACCTGCGTTTAGAGCCTCTGCGGCTGCGTCGTTAGCAGTCTGCT 2302 | || ||| |||||| || | ||||| || |||||| | || ||||| | || | Sbjct 6295 AGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTT 6236 Query 2303 GGCCTCCTC------TAGCAGATCTGCCGTCGACCTGGAATTCACCCCAGGTGATGGTAT 2356 | || |||| | |||||||| || || | ||||||||| ||||| || |||| Sbjct 6235 GACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTAT 6176 Query 2357 CCCCGTCCTTATCGACGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGGATGTTGG 2416 | |||| ||| |||| || ||||| || | ||||||||||||| ||||||| ||||| | Sbjct 6175 CTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTG 6116 Query 2417 GGTGAAAGTGATTCGATCTGTTCGGTGAGACCAGATCGAAGAATCTGCTATTTGTGCAGA 2476 | || || || | || ||| | || ||||| ||||||||||||||| |||| ||||| Sbjct 6115 GATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATG 6056 Query 2477 CGAATTTGCCTTCGAACTGCACCAACACATGGAGGTGAGGTTCCC 2521 | | || |||||||| || | | ||| ||||| ||||||||| Sbjct 6055 TGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCC 6011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8851955866950