Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004651.1 Length=2714 Score E Sequences producing significant alignments: (Bits) Value seq9745 414 2e-112 >seq9745 Length=7305 Score = 414 bits (458), Expect = 2e-112 Identities = 579/805 (72%), Gaps = 28/805 (3%) Strand=Plus/Minus Query 1612 GTTCTTTTCTTCTTCCAAGTACTCTTTATAGCTGGAGTTTGGTCCAGGATTGCAGAGGAA 1671 |||||| ||||| || | |||||||||| || ||||| ||||| |||||||| ||||| Sbjct 6816 GTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAA 6757 Query 1672 TATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCA 1731 || ||||| || || ||||||| || || ||||| |||||| || | || ||||| Sbjct 6756 GATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCA 6697 Query 1732 GTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGATAGTGCGGATCGACGTCATC 1791 || |||| |||||||||||| || ||||| ||||||| ||| ||||||| |||| ||| Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1792 AATGACGTTGTACCAAGCATCATTATTATACACTTTTGGACTTAAATCTAAATGGCCACA 1851 ||||||||||||||| |||||||| || ||| |||||| |||| ||| |||| || || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1852 TAGATAATTATGTGGTCCCAATGACCTAGCCCACATCGTCTTCCCTGTTCTACTATCACC 1911 || ||||| ||||| || ||||| |||||||| || || ||||| |||||| ||||| Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1912 CTCAATTACTATACTTATTGGCCTAAATGGCCGCGCAGCTTCACTGAGAACATTAT-TAC 1970 || | |||||||| || || | |||| | ||| |||| | ||| || | | | Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTC 6457 Query 1971 AAGCCCATTCTTCAAG-TTCTCCGGGAACTTGATTAAAAGNNNNNNNNNNNAAGGGAGAA 2029 || |||| |||| ||| ||||||| | ||| ||||| | || |||||| Sbjct 6456 AA-CCCAGTCTTGAAGAATCTCCGGTACGTTG-TTAAATGTACTGGATACAAAAGGAGAA 6399 Query 2030 --ATATATTCCTCTATAGGAGGAG---TAAAAATCCGATCTAAATTA-CATTTTATATTG 2083 ||||||| | ||| |||| || ||| ||| |||||| ||||| || | Sbjct 6398 ACATATATTGC-----AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAAT-CTA 6345 Query 2084 TGATATTGGAAAATATAATCTTTTGGAAGTTTTTCCCTCATTATTGCTAACGCCGCTTCA 2143 ||| | | ||| |||||||||||| |||||||||| ||||| |||| || ||| Sbjct 6344 TGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTT 6285 Query 2144 GCCGAACCTGCATTGAGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTC-- 2201 || || | ||| ||||| ||||| |||||||||| | |||||||| |||| Sbjct 6284 TTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTT 6225 Query 2202 ----TAGCAGATCGTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACCGTCCTTC 2257 | ||||||| |||||| ||||| || | ||||| || || ||| |||| |||| Sbjct 6224 GTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTC 6165 Query 2258 TCGATGTAAGATTTGACATCGGAGCTGGATTTAGCTCCCTGGAAGTTTGGATGGTATTGA 2317 ||||| || || || || | ||||||||||||| ||||||| | |||||||||| | || Sbjct 6164 TCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGT 6105 Query 2318 GTTGAGGTATTAGGGTGAGTGAC---ATCGAAATGTCTGGGGTTTCTGAACTGGCATTTA 2374 ||||| | | | ||| ||| |||||| |||| || || | | | || Sbjct 6104 GTTGACCTGGTTG---GAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTC 6048 Query 2375 CCTTTGAATTGGATGAGCGCGTGGA 2399 |||| ||||||||| ||| |||||| Sbjct 6047 CCTTCGAATTGGATAAGCACGTGGA 6023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8496168856800