Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004654.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq9745 401 1e-108 >seq9745 Length=7305 Score = 401 bits (444), Expect = 1e-108 Identities = 682/983 (69%), Gaps = 23/983 (2%) Strand=Plus/Minus Query 1617 CGAAGGACGCATTTTTAATTGCCCATGCTTTTAGTGCTGCGTTCTTGTCCTCATCTAAAT 1676 ||||| |||||| | | ||||| | || | ||||||||||| || || || | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1677 ACTCGGTGTATGATGACGTTGGG-CCTGGATTGCAGAGGAAGATTGTTGGGATACCACCT 1735 |||| | || ||| |||||| ||||||||||| ||||||||||| || || || ||| Sbjct 6796 ACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCT 6738 Query 1736 TTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATG 1795 |||| || || || || ||||| | | || ||||| || |||| |||||||||| Sbjct 6737 TTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1796 AATTCTTTAAAGTGCTTTAGATAGTGGGGATCCACGTCATCAATCACGTTGTACCAAGCA 1855 ||||| ||||| || |||| ||| | ||||| |||| |||||| ||||||||||| ||| Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1856 CTGTTGCTGTAAACCTTGGGGCTTAAGTCAAGATGGCCGCAAAGGTAATTGTGATGTGGG 1915 ||| |||| || ||||||| ||| ||| ||||| | ||||||||| |||| Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTG---TGGG 6561 Query 1916 CTCAACGACCTGGCCCACATGGTCTTCCCTGTCCTGCTATCCCCTTCAATCACAATGCTT 1975 | || || || ||||| || || ||||| || || || ||||| | || || || Sbjct 6560 CCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTC 6501 Query 1976 ATGGGCCTCCACGGCCGCGCAGCGGAATCCCTGGCGTTCTCTGCAGCCCATTCCTCGAGT 2035 || || | |||| | ||| || | | |||| ||| || |||| || | || Sbjct 6500 ATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGA 6441 Query 2036 TCTTCCGGAACTCGATCAAAGGAAGAAGAAAGAAAAGGACAAACAAATTCCTCCAACGGA 2095 ||||| || | ||| | | || | ||||||| ||||| || | || || Sbjct 6440 ATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATAT-TGCA--GGT 6384 Query 2096 GGA--CTAAAA-ATCCTATCTAAATTANNNNNNNNNNTATGAAATTGTAAAACAAAATCT 2152 ||| || || ||| |||| |||||| ||||||| ||||| | ||||| Sbjct 6383 GGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCT 6324 Query 2153 TTGGGAGCTTTCTCCCTTAATATAGACAAGGCCGCTGATTTAGAGCCTGAGTTGATTGCC 2212 || || ||| ||||| | ||| ||||| |||| |||||| || || || | || Sbjct 6323 TTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCT 6264 Query 2213 TCGGCATAAGCGTCGTTGGCAGATTGGCAACCTCCTCTAG------CTGATCTTCCATCG 2266 || || ||| | || || || ||||| ||| ||||| | | ||||||||||| Sbjct 6263 TCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCC 6204 Query 2267 ACCTGGAAAACTCCATAATCAACGACGTCTCCGTCTTTCTCCATGTAGGCTTTGACGTCT 2326 | |||||| |||| |||||| ||||||| ||||| || || | || |||| Sbjct 6203 ATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT-- 6146 Query 2327 GACGAGCTC---TTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTAGTTGGGGAG 2383 | ||||| ||| ||||||| ||||| ||||||||||||| |||||| ||||| ||| Sbjct 6145 -AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAG 6087 Query 2384 ACGAGGTCGAAGAATCTTTGATTCGTGCACTTGTATTTTCCCTCGAACTGGATGAGAACG 2443 || || ||||||||||| | ||||||||| |||| || || ||||| ||||| || ||| Sbjct 6086 ACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACG 6027 Query 2444 TGGAGATGAGGGCTCCCATCTTCGTGTAGTTCTCTGCAAATTCTGATGAATAATTTATTT 2503 |||||| |||| || | ||| || |||||||||||| ||||| || || ||| Sbjct 6026 TGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTT 5967 Query 2504 GTTATAGTATCTAGGGCTTGTATCTGAGAGAGTGCCTCTTCTTTTGTTAAGGAGCAGTGA 2563 | |||| |||| ||| || ||||| || || |||||||| | |||||||| Sbjct 5966 ACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGG 5907 Query 2564 GGGTAAGTGAGGAAATAATTTTT 2586 || || || || ||| |||||| Sbjct 5906 GGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8645168833020