Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004655.1 Length=2785 Score E Sequences producing significant alignments: (Bits) Value seq9745 558 6e-156 >seq9745 Length=7305 Score = 558 bits (618), Expect = 6e-156 Identities = 732/1001 (73%), Gaps = 17/1001 (2%) Strand=Plus/Minus Query 1622 GAACAATGGCTCGTGGAGGGTGATGAAGGTGGCATTCTTTAAAGCCCAGGCTTTAAGGGA 1681 ||| ||||||| | |||| |||| ||||| | | |||||||| |||| | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAG- 6821 Query 1682 CTG-GTTCTTTTCCTCGTCCAGAAACTCTTTATATGATGATGTTGGTCCTGGATTGCAGA 1740 ||| |||||| || ||||| |||||||||||||| ||| | |||||||||||||| | Sbjct 6820 CTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAA 6761 Query 1741 GGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTCCCGTACTTTGTATTGCTTT 1800 ||||||| ||||| || || ||||||| || || ||||| ||||| || |||| | Sbjct 6760 GGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACT 6701 Query 1801 GCCAGTCTCTTTGGGCCCCCATGAATTCTTTGAAGTGCTTTAGATAGTGGGGATCGACGT 1860 |||| || |||| ||||||||||||||| || || || |||| ||| | ||||| |||| Sbjct 6700 GCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGT 6641 Query 1861 CATCAATGACGTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGACTGAGATCCAGGTGTC 1920 ||||||||||||||||||||| || ||| |||| ||||| || | ||| || | Sbjct 6640 TATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGAC 6581 Query 1921 CACATAAGTAGTTGTGTGGACCCAGAGAGCGGGCCCACATTGTCTTTCCGGTCCTACTAT 1980 | |||||||| |||||||| || | || | ||||| ||||| || || || ||| | Sbjct 6580 CGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCT 6521 Query 1981 CGCCCTCGATGACGATACTATTAGGTCTCCATGGCCGCGCAGCGGAACCCATCACGTTCT 2040 | || || | || ||||| |||||| |||| | ||| || || || ||||| | Sbjct 6520 CACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTT 6461 Query 2041 CGGAAACCCAGACTTCAAGTTCCTCAGGAACGTTAGTAAAAGAAGAAGACAGAAAAGGAG 2100 | ||||||| ||| ||| ||| || ||||| |||| | | || | |||||||| Sbjct 6460 CTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAG 6401 Query 2101 AAACATAAGGAGCTGGTGGCTCTTGAAAAATCCTATCTAAATTACTACTTAAGTTATGAT 2160 ||||||| || ||||| | || || ||| |||| |||||| | |||| ||||| Sbjct 6400 AAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAA 6341 Query 2161 ATTGAAAAATAAATTCTTTTGGGAGTTTCTCCTTAATAAT-TAGAAGTGCTGCTGCCTTG 2219 | | ||| | | ||||||||| |||| ||| |||| || | ||| ||||||| || Sbjct 6340 AACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTA 6282 Query 2220 GAACCTGAGTTTAATGCTTCGGCACATGCGTCATTAGC--ATTG-TGGCAGCCGCCTCTA 2276 || || || |||| ||||| || | | |||||||| |||| || | || | | || Sbjct 6281 GACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTA 6222 Query 2277 ---GCCGATCTGGCGTCGATCTGGAATTCGCCCCACTCAGTGGTATCCCCATCTTTGTCG 2333 || ||||| | || ||||||||||| ||||| ||| | ||||| || | || ||| Sbjct 6221 GTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCG 6162 Query 2334 ATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCTTGAATGTTCGGATGGAAATGTGTT 2393 || || ||||| |||| ||||||||||||| |||| || ||||| ||||||||||||||| Sbjct 6161 ATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTT 6102 Query 2394 GATCGTGTTGGGGATACCAGGTCGAAGAATCGCTTATTTGTGCATGAGAATTTGCCTTCG 2453 || | ||||| || || || |||||||||| ||||| ||||||| | | || |||||| Sbjct 6101 GACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCG 6042 Query 2454 AACTGAATAAGCATGTGGAGATGAGGTTGCCCATCATCGTGAAGTTCTCGGCAAACTTTG 2513 || || ||||||| ||||||| |||||| || | || ||| ||||| ||||| ||| Sbjct 6041 AATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTG 5982 Query 2514 ATGTATTTCTTGTT---TGTGGGAGTTGGGATGTTTAATATTTGGGATAATGCTTCGTGT 2570 |||||||||||||| || || | || || | || |||| ||| || | ||||| | | Sbjct 5981 ATGTATTTCTTGTTTACTGGGGTATTTAGG-TTTTGAATAATTGAGAGA--GCTTCCTCT 5925 Query 2571 TTAGATAGAGAACATTTGGGATATGTGAG-AAAATAGTTTT 2610 || | ||||| || | ||||||||| || |||||| |||| Sbjct 5924 TTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8721253927260