Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004657.1 Length=2605 Score E Sequences producing significant alignments: (Bits) Value seq9745 315 1e-82 >seq9745 Length=7305 Score = 315 bits (348), Expect = 1e-82 Identities = 288/362 (80%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 2222 TCGTTAGCCGATTGCTGGCCTCCTCTAG------CAGACCTACCGTCGATTTGAAACTCC 2275 || ||||||||||| || || ||||| | |||| || || || || || || || Sbjct 6251 TCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCT 6192 Query 2276 CACCACTCAACGGTGTCGCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTA 2335 | ||| |||| || || |||| ||| ||||| || ||||| |||| |||||| |||||| Sbjct 6191 CCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTA 6132 Query 2336 GCTCCCTGTATGTTCGGATGGAAATGTACTGACCTGGTTGGGGACACCAGATCGAAGAAT 2395 ||||||||||||| |||||||||||| |||||||||||| || || |||||||||||| Sbjct 6131 CCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAAT 6072 Query 2396 CTCTGATTCGTGCATTGGTATTTCCCTTCGAATTGGATAAGCACATGCAGATGAGGTTGC 2455 || | |||||||||| ||| ||||||||||||||||||||||| || ||| |||||| | Sbjct 6071 CTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCC 6012 Query 2456 CCATCTTCGTGCAATTCTCTGCAGATCTTGATGAATTTCTTGTTAACTGGTGTTGCTAGG 2515 | | ||| || ||||||||| ||||||||| |||||||||| ||||| || |||| Sbjct 6011 CTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGG 5952 Query 2516 TTTTG--TAATTGGGAAAGTGCTTCTTCTTTAGTAAGAGAGCACTGGGGATAAGTGAGGA 2573 ||||| |||||| || || |||| ||||| ||||||||||| |||||||| || || | Sbjct 5951 TTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAA 5894 Query 2574 AA 2575 || Sbjct 5893 AA 5892 Score = 140 bits (154), Expect = 5e-30 Identities = 246/354 (69%), Gaps = 12/354 (3%) Strand=Plus/Minus Query 1609 GAAGACCGCATTCTTGAGGGTCCAGTTTTTGAGTGCTGTGTTCTCCTCTTTGTCCAGGAA 1668 |||||| ||||| |||| | |||| || | |||| ||||| |||| ||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1669 ATCTTTATAACTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCTCCTTT 1728 ||||||||||| | || ||||||||||| | ||||| || || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1729 AATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCCTTTGGGACCCGATTAA 1788 || || || ||||| |||||| | | ||| ||||||| || |||| || ||| || || Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1789 TTCTTTCCAGTGCTTTAACTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATATTC 1848 ||| || | || ||||| ||| |||| | |||| |||||||||||| || | Sbjct 6675 TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTA--C 6624 Query 1849 CA--CTTCGTTTGAGAACACTCTGGAATTGAAGTCTAGGTGTCCAC-TAAGATAATTATG 1905 || | || || | || | | | | | || || || | |||| ||||| || Sbjct 6623 CAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAG-TAATTGTG 6565 Query 1906 TGGGCCTAATGCCCGAGCCCACATCGTCTTCCCTGTTCTTGAATCACCTTCTAC 1959 ||||||||||| | |||||| || || ||||| ||||| | ||||||||||| Sbjct 6564 TGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTAC 6511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8150615720460