Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004659.1 Length=2603 Score E Sequences producing significant alignments: (Bits) Value seq9745 374 1e-100 >seq9745 Length=7305 Score = 374 bits (414), Expect = 1e-100 Identities = 665/957 (69%), Gaps = 40/957 (4%) Strand=Plus/Minus Query 1638 TGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAG 1697 |||||| | |||| ||| || || |||||||| || | || ||||||||||| Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1698 CACGATTGATGGGATCCCTCCTTTTATCTGAACGGGCTTGCCGTATTTGCAATTTGACTG 1757 | ||||| || ||||| ||||| | | || |||||| |||||| | | ||| |||| Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1758 CCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGTTTTAGCTTTAGATAGTGCGGTGC 1817 ||| || | | |||||||| | ||| || | ||||||| ||| |||| | Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCGGATC 6646 Query 1818 GACGTCATCAATGACGTTATATTCCA--CTTCGTTCGAGTAGACTCGTGGGTTGAAGTCC 1875 |||| |||||||||||| || ||| | || || ||| | |||| | | || Sbjct 6645 AACGTTATCAATGACGTTGTA--CCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCA 6588 Query 1876 AGATGTCCAC-TAAGATAGTTATGTGGGCCTAAGGCACGAGCCCACATCGTCTTCCCTGT 1934 ||| || | |||| || || ||||||||||| | | |||||| || || ||||| || Sbjct 6587 TAATGACCGCATAAG-TAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGT 6529 Query 1935 TCTCGAATCACCTTCCACTATGAGACTCATTGGTCTATCTGGCCGCGCAGCAGAACCTCT 1994 ||| | |||||||| || | | |||||| |||| | |||| | ||| | || | Sbjct 6528 TCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC---T 6472 Query 1995 CCCAAAATATTCATCGGCCCACTCTTGCATATCGTCTGGCACGTTAGTGAACGA---GGA 2051 | ||| | ||| || |||| ||||| | | || || ||||| | || | ||| Sbjct 6471 CACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGA 6412 Query 2052 TAGGGGAAACGGAGGAGCCCATGGTTCCGG---AGCCTTTTGGAATATTTTGGTGGCGTT 2108 || ||| |||| | | || | | || ||||| ||||||| | || Sbjct 6411 TAC---AAAAGGAGAAACATATATTGCAGGTGGAGCCT---GGAATATCATATCCAAATT 6358 Query 2109 TGCAACTAAGTTATGATGTTGAAGGAAGAAATGCTGTGGTTGTTCTTCCCTGATTAT-TC 2167 ||| ||| ||||| | | | ||| | ||| ||| |||||| ||||| || Sbjct 6357 AGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTC 6298 Query 2168 GCAGAGCTTCCTCTGCACATGTTGCATTTAACGCCTTGGCATATGTGTCGTTAGCTGTCT 2227 || ||| | | | | | ||||| || | || || || ||||| | | Sbjct 6297 TAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATT 6239 Query 2228 GCTGGCCTCCTCTAG------CAGATCTGCCGTCGATTTGGAATTGCCCCCATTCAATAG 2281 | || || ||||| | ||||||| || || || ||||||| ||||| ||||| | Sbjct 6238 GTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTG 6179 Query 2282 TATCGCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGT 2341 |||| |||| ||| ||||| || ||||| |||| |||||| |||||| ||||||| |||| Sbjct 6178 TATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGT 6119 Query 2342 TCGGATGGAAATGTACTGACCTGGTTGGGGACACCAGATCGAAGAATCTGTTATTCGTGC 2401 | |||||||||||| |||||||||||| || || ||||||||||||||||||||||||| Sbjct 6118 TTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGC 6059 Query 2402 ATTGGTACTTCCCTTCGAACTGGATGAGCACATGCTGATGAGGTTCCCCATTTTCGTGCT 2461 || ||||||||||||||| ||||| ||||| || || ||||||||| ||||| || Sbjct 6058 ATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAG 5999 Query 2462 TATCTCTGGAAATCTTGATGAACTTCTTGTTGACTGGAGTTGTTAGGGTTTGGA--ATTG 2519 |||||| ||||||||||| | |||||||| ||||| || ||||| |||| | |||| Sbjct 5998 CTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTG 5939 Query 2520 GGAAAGTGCTTCCTCTTTAGTTAAAGAGCACTGGGGATATGTGAG-GAAATAGTTTT 2575 || || |||||||||| || | |||||| ||||||||||| || ||||| |||| Sbjct 5938 AGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8144275295940