Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004661.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq9745 401 1e-108 >seq9745 Length=7305 Score = 401 bits (444), Expect = 1e-108 Identities = 696/998 (70%), Gaps = 43/998 (4%) Strand=Plus/Minus Query 1611 GAAGACCGCATTCTTGATGGTCCAG---TTAAGTAGTGATGAGTTTTCCTCTTTGTTCAG 1667 |||||| ||||| ||| | |||| |||| ||| || ||| | |||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAA-TAGC--TGCGTTCTTATCTTCGTCAAG 6799 Query 1668 GAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCC 1727 || |||||||| || | || ||||||||||| | ||||| || ||||| || Sbjct 6798 AAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCC 6739 Query 1728 TTTAATTTGAACTGGCTTGCCGTACTTACAATTTGACTGCCAGTC-CTTCTGGCCCCAGA 1786 ||||| || || ||||| ||||| | | ||| ||||||| || ||| ||||||| Sbjct 6738 TTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCAT 6679 Query 1787 AAGATTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTAT 1846 | |||| || | || |||| ||| |||| | |||| |||||||||||| | Sbjct 6678 GA-ATTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGT 6626 Query 1847 ACTCCACTTCGTTCGAATAGACTCTTGGGTTGAAGTCCAGATGTCCAC-TAAGATAATTA 1905 || | || || || | ||||| | | || ||| || | |||| ||||| Sbjct 6625 ACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAG-TAATTG 6567 Query 1906 TGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTTCTCGAATCACCTTCCACGATG 1965 ||||||||||| | | |||||| || || ||||| ||||| | |||||||| || | Sbjct 6566 TGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACT 6507 Query 1966 ATACTAACAGGTCTCTCTGGGCGCGCAGCGGAATCACACCCAAAATAATCATCCGCCCAC 2025 ||||| | ||||| | || | | ||| || ||| | ||| | || || |||| Sbjct 6506 ATACTCATAGGTCGGTGAGGCCTCCCAGAGG---CACTCACAACGTTTTCTTCAACCCAG 6450 Query 2026 TCTTGCATCCTCTCCGGCACGTTAGTGAATGAGGAGAGTTGAAACGGAGGAACCCACGGT 2085 ||||| | ||||||| ||||| | |||| | | ||| |||| ||| | | Sbjct 6449 TCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATT 6390 Query 2086 GACGG---AGCCTTTGCGAATATTCTCTCTAGGTTTGAGCGGATGT----TATGATTTTG 2138 | || ||||| |||||| | || | || ||| || | ||||| | Sbjct 6389 GCAGGTGGAGCCTG---GAATATCATATCCAAATT--AGC--ATTTAATCTATGAAAACG 6337 Query 2139 CAGGACAAAATCTTTGGGTTGTTCTTCCTTCAAAACCGTCATGGCACCTAGAACAGATCC 2198 | | ||||||| || ||| |||| | | | | | ||| || ||| || Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCC 6277 Query 2199 TGCATTCAACGCCTTGGCATATGAATCGTTAGCTGTTTGCTGACCTCCCCTAG------C 2252 | ||| | || | || || ||| ||||| | ||| ||||| || || | | Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2253 AGATCTACCGTCGACCTGGAATTCTCCCCATTCAATGGTGTCCCCGTCCTTGTCGATGTA 2312 |||||| || || | ||||||||||||||| ||||| || || |||| ||| ||||| || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2313 GGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTACTGACCT 2372 ||||| || | ||||||||||||| ||||||| ||||| |||||||||||| |||||| Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Query 2373 GGTTGGGGACACCAGATCGAAGAGTCTGTTATTCGTGCATTGGTACTTCCCTTCGAACTG 2432 |||||| || || |||||||||| |||||||||||||||| ||||||||||||||| || Sbjct 6096 GGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTG 6037 Query 2433 GATGAGCACATGCAGATGAGGTTCCCCATTCTCATGCAATTCTCTGCAGATCTTGATGAA 2492 ||| ||||| || ||| ||||||||| || ||||| ||||||||| ||||||||| | Sbjct 6036 GATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTA 5977 Query 2493 CTTCTTGTTAACTGGAGTTTGTAGGTTTTC--TAATTGGGAAAGTGCTTCCTCTTTAGTA 2550 |||||||| ||||| || | |||||||| |||||| || || |||||||||| ||| Sbjct 5976 TTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTA 5919 Query 2551 AGAGAGCACTGGGGATATGTGAGGAAATAATTTTTGGA 2588 |||||||| ||||||||||| || ||| |||||| || Sbjct 5918 AGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGA 5881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8172807206280