Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004673.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq9745 616 3e-173 >seq9745 Length=7305 Score = 616 bits (682), Expect = 3e-173 Identities = 736/995 (74%), Gaps = 12/995 (1%) Strand=Plus/Minus Query 1573 AACGGTTGGGTGAGAAAGACGAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAG 1632 || || |||||||| || |||| |||||||| | | |||||| | || | ||||| | Sbjct 6875 AATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCG 6816 Query 1633 TTCTTTTCCTCGTCCAGATACTCTTTATAGCTAGCGTTGGGCCCAGGATTGCAGAGGAAG 1692 ||||| || ||||| ||| |||||||||| || | |||||| || |||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1693 ATTGTTGGTATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAG 1752 ||||| || || || ||||||| || || ||||| ||||| || | || | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1753 TCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCTACGCCATCA 1812 || |||| |||||||||||| || ||||| || || | | ||||||| ||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1813 ATGACGTTATACCAAGCGTCGTTACTGTACACCTTTGGGCTTAGATCTAGATGCCCACAT 1872 |||||||| ||||| || || || ||||| |||||||||| ||| ||| || ||| Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1873 AAATAATTATGTGGGCCTAAAGACCTAGCCCACATTGTCTTCCCAGTACGACTATCACCC 1932 || ||||| ||||||||||| || |||||||| ||||| |||||||| | | ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1933 TCAATTACTATACTTTGAGGTCTCAGGGGCCGCGCAGCGGCGTCGACAACATTCTCAGAC 1992 || | |||||||| ||||| | |||| | ||| ||| ||||| || || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 1993 ACCCATTCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAGGAAAAAGGAGAAACA 2052 ||||| |||| ||| || || || | | || | | || ||||||||||||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2053 TAAGGAGCTGGTGGCTCCTGAAAGATTCTGTCTAGATTTGCATTTAAATTATGAAATTGT 2112 || || ||||| |||| || || | || | ||| |||||||| ||||||| || Sbjct 6395 TATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGT 6336 Query 2113 AGTACAAAATCTTTAGGAGCTAGCTCCTTGATGA-CTCTAAGAGCCTCTGACTTACTTCC 2171 | | ||||||| || | ||| | || | ||||||| || ||| ||| || Sbjct 6335 AAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCC 6277 Query 2172 CGCGTTAAGTGCTGCGGCGTAAGCGTCGTTGGCTGTTTGTTGCCCTCCTCTTG------C 2225 | || || ||| | |||||| | || || || | |||||| || ||||||| | Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2226 TGATCTTCCGTCGATCTGAAATTCCCCCCAGTCGAGAATGTCCCCGTCCTTGGCGATGTA 2285 |||||||| || ||||| ||||| ||||| || | | || |||| ||| |||| || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2286 GGACTTGACGTCGGAGCTGGATTTAACTCCCTGAATGTTCGGATGGAAATGTGCTGACCT 2345 ||||| |||| ||||||||||||| ||||||| ||||| ||||||||||||| |||||| Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Query 2346 GGTTGGGGATACGAGGTCGAAGAATCTGTTATTTTTGCACTTGTATTTCCCTTCGAACTG 2405 |||||| || || || ||||||||||||||||| |||| |||| ||||||||||| || Sbjct 6096 GGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTG 6037 Query 2406 GATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGATTCTAATGTA 2465 ||| |||||||| ||| ||||||||| ||||||||| |||||||| || | ||||| Sbjct 6036 GATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTA 5977 Query 2466 TTTTTTGTTTACTGGGGTTTGTAGGTTTTG--TAATTGGGAAAGTGCCTCCTTTTTAGTA 2523 ||| |||||||||||||| | ||||||||| |||||| || || | |||| ||| ||| Sbjct 5976 TTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTA 5919 Query 2524 AGAGAGCATGTGGGATAAGTGATGAAATAATTTTT 2558 |||||||| |||||| || | ||| |||||| Sbjct 5918 AGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8575424163300