Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004674.1 Length=2799 Score E Sequences producing significant alignments: (Bits) Value seq9745 320 3e-84 >seq9745 Length=7305 Score = 320 bits (354), Expect = 3e-84 Identities = 700/1037 (68%), Gaps = 16/1037 (2%) Strand=Plus/Minus Query 1620 GAACAATGGCTCGTGGAGGGCGATGAAGGTGGCATTCTTTAAAGCCCAGGCTTTAAGGGA 1679 ||| ||||||| | |||| |||| ||||| | | |||||||| |||| | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGC 6820 Query 1680 TTGGTTCTTTTCCTCGTCCAGAAACTCTTTATATGATGATGTTGGTCCTGGATTGCAGAG 1739 | |||||| || ||||| |||||||||||||| ||| | |||||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1740 GAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGCTTCCCGTATTTTGTATTGCTTTG 1799 |||||| ||||| || |||||||||| || || ||||| |||||| || |||| || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1800 CCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTTTGAGGTAGTGGGGGTCGACGTC 1859 ||| || |||| ||||||||||||||| || || ||||| | || | || || |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1860 ATCAATGACGTTGTACCATGCGTCGTTTGAATATACCTTGGGAGACAGATCCAGGTGTCC 1919 |||||||||||||||||| || || || || || || | ||| || || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1920 ACAAAGATAATTATGGGGTCCCAGTGAACGAGCCCACATTGTTTTGCCGGTTCGGCTATC 1979 || | ||||| || || || | ||| | |||||| |||||||| || |||| || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1980 ACCTTCTAGAACAATACTGATCGGTCTCCATGGCCGCGCAGCGGGACTGCATATATTTTC 2039 |||||||| ||| ||||| || |||| |||| | ||| || ||| | ||||| Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2040 GGATACCCATACCTCTATGTCTTCTGGGAC-TTGTGTAAAAGATGATGATAAGAACGGAC 2098 ||||| | | | || || || |||| |||| | |||| || ||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGT-TAAATGTACTGGATACAAAAGGAG 6401 Query 2099 TAACGTAAGTTTGTGGCGGAGCCTGGAAGATTCTATCTGCGTTAGCAGATATGTTATGGA 2158 ||| || || || ||||||||||| || |||| |||||| || |||| | Sbjct 6400 AAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAA 6341 Query 2159 ACTGTaaaaaaaaGGACTTTGGATCTTTTTCTTTAATAATTTGAAGAGCCTCGGATTTAG 2218 | ||||| || | ||||| |||||| |||| || | | || | | ||||| Sbjct 6340 AACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAG 6281 Query 2219 ACGAAGCATTCAACGCGTCTGCATATA---CCTGAGCTAAATGTTGGCCCTCCC---CCC 2272 || || ||| | || ||||| || | | | ||| | ||||| ||| | | Sbjct 6280 ACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAG 6221 Query 2273 TTGCACTTCTGGCATCGACTTGGAAAAGTCCAGCGTCAAGAAATTCCCCTCCCTTTTCAA 2332 ||||| ||| |||| | ||||| ||| |||| || || ||| || | Sbjct 6220 TTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGA 6161 Query 2333 TGTAAGCTTTGACATCGGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTG 2392 | || | || || | ||| |||||| ||||||| ||||| |||||||||||||||| Sbjct 6160 TATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTG 6101 Query 2393 ATCGGGATGGGGAAATGAGATCGAAGAATCTCGGGTTGGTACATTGGAACTTGCCTTCGA 2452 | | || ||| || | |||||||||||||| || || ||| | |||| ||||||| Sbjct 6100 ACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGA 6041 Query 2453 ATTGGATGAGAACATGGAGATGAGGCACCCCATCCTGATGTAGTTCTCTGCAAACCCTAA 2512 ||||||| || || |||||| |||| ||| | | ||| ||||||||||| | | | Sbjct 6040 ATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGA 5981 Query 2513 TGAATTTGAT-AATCGTCGGGTACGAAAGGGCTTG--TAATTGGGAAAGGGCCTCTTCTT 2569 || |||| | | | ||||| ||| ||| ||||| || || || || |||| Sbjct 5980 TGTATTTCTTGTTTACTGGGGTA-TTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTT 5924 Query 2570 TTGTTAATGAGCATCGGGGATAGGTTATGAAATAATTTTTGGCATTAATTTGAAAACGAC 2629 |||| | ||||| ||||||| |||| ||| |||||| | | ||| |||||||| Sbjct 5923 TTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGA- 5865 Query 2630 CGGCTC-TTGGCATATT 2645 ||| |||||||||| Sbjct 5864 GAACTCGTTGGCATATT 5848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8760045118600