Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004675.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq9745 549 3e-153 >seq9745 Length=7305 Score = 549 bits (608), Expect = 3e-153 Identities = 735/1004 (73%), Gaps = 26/1004 (3%) Strand=Plus/Minus Query 1596 TGGCTGGTTGAGGGTGATGAAGACCGCATTCTTTATAGTCCAAGCCTTCAGGGATGTATT 1655 ||||||| ||||| |||||| ||||| | | || ||| | ||| | | || || Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1656 CTTATCCTCATCGAGATATTCTTTATATGAGGATGTTGGG-CCTGGATTGCAGAGGAAGA 1714 |||||| || || ||| | |||||||| || |||||| ||||||||||| ||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGA 6755 Query 1715 TAGTGGGAATGCCGCCTTTAATTTGAATTGGTTTCCCGTA-CTTCGTGTTGCTTTGCCAG 1773 | ||||| || |||||||||| || || || || ||||| |||| | || ||||| Sbjct 6754 TTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAA 6696 Query 1774 TCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTTTAGGTAATGCGGATCTACGTCATCA 1833 || |||| |||||| | ||||||||| | || |||| ||| ||||||| |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1834 ATGACGTTATACCAAGCGTCATTAGAATATACCTTTGGACTTAAGTCTAAATGACCACAT 1893 |||||||| ||||| || ||||| || ||||| |||| || ||||||| ||| Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1894 AAGTAATTATGTTGCCCTAATGATCTAGCCCAAATAGTTTTGCCGGAACGACTATCGCCC 1953 |||||||| ||| | ||||||||||||||||| || ||||| || | | | || || Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1954 TCTATTACAATACTATTGGGTCTCCAAGGCCGCGCAGCGGCAC-CACACACATTCTCAGA 2012 |||| || ||||| | |||| ||||| | ||| ||||| |||| || || || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACA-ACGTTTTCTTC 6457 Query 2013 GACCCACTCTTCAAGTTCCTCAGGGACTTGATCAAAAGAAGATGAAGAAAAAGGAGAAAT 2072 ||||| |||| ||| ||| || || | | ||| | | || ||||||||||| Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAAC 6397 Query 2073 ATAAGGCTCTGGGGGAGCCTGGAAAATCCTATCTAAATTAGTCTTTAAATTATGATACTG 2132 ||| | || ||||||||||| ||| |||| ||||||| ||||| ||||| | | Sbjct 6396 ATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2133 AAAAATAAAATCTTTAGGGAGTTTTTCCCTAATAATAGCCATAGCGGCTTCAGCGGAACC 2192 ||| | ||||||| ||| ||||||||||||| || | | || ||| || || Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCC 6277 Query 2193 TGCGTTTAAAGCGTCGGCGCATGCGTCGTTAGC--ATT-TTGGCAGCCTCCTCTA---GC 2246 | |||| || || ||| | | || ||||| ||| ||| | |||| | || || Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2247 ACTTCTGCCGTCGACCTGGAATTCTCCCCATTCAAGTGTGTCTCCATCCTTGTCGATGTA 2306 | ||| || || | ||||||||||||||| |||| ||| ||||| | ||| ||||| || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2307 GGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCT 2366 ||||| |||| ||||||||||||| ||||||| ||||||||||||||||||| |||||| Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Query 2367 GTTTGGGGATACCAGGTCGAAGAATCGGTGATTCTTGCAGTTGAATTTTCTCTCGAACTG 2426 | |||| || || || |||||||||| || |||| |||| || | || | ||||| || Sbjct 6096 GGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTG 6037 Query 2427 AATAAGCACGTGGAGATGAGGTTCCCCATTTTCGTGTAGC-TCTCTGCAGATTTTGATGT 2485 ||||||||||||||| ||||||||| ||||| || ||| |||||||| || ||||||| Sbjct 6036 GATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGT 5978 Query 2486 ATTT----TTTATTGGTGGGTGTTTCAAGGTTT--AATAATTGGGAGAGTGACTCTTCCT 2539 |||| |||| || |||| ||| |||||| ||||||| ||||| | || || | Sbjct 5977 ATTTCTTGTTTACTG--GGGTATTT--AGGTTTTGAATAATT--GAGAGAGCTTCCTCTT 5924 Query 2540 TTGTGAGAGAGCATTTTGGATATGTGACGAAATAGTTTTTGGAA 2583 |||| |||||||| | |||||||| | ||| ||||| ||| Sbjct 5923 TTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAA 5880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8661019894320