Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004824.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq9745 407 3e-110 >seq9745 Length=7305 Score = 407 bits (450), Expect = 3e-110 Identities = 597/840 (71%), Gaps = 20/840 (2%) Strand=Plus/Minus Query 1592 GAAGACTGCATTCTTTATTGCCCACTGTTTTAGTGCTGAAtttttttCTTCGTCCAGATA 1651 |||||||||||| | | ||||| || | |||| || || |||||||| ||| | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1652 TTCTTTATAGCTGCTATTTGGTCCTTTATTGCAGAGGAAGATAGTGGGTATTCCACCTTT 1711 |||||||| || || |||||| |||||| |||||||| ||||| || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1712 AATCATGACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAA 1771 || | |||||||||||| | | || ||||| || |||| |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1772 TTCTTTAAAATGCTTTAGGTAGTGCGGGTCGACGTCATCAATGACGTTGTACCAAGCTTC 1831 ||| |||||||| |||| || |||| || |||| |||||||||||||||||| || || Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1832 ATTATTGTACACTCTCGGGCTCAGATCCAGATGACCGCATAGATAATTGTGTGGGCCTAA 1891 ||| |||||| | | ||||| | ||| ||||||||||| ||||||||||||||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1892 AGACCTGGCCCACATTGTCTTGCCCGTACGACTATCACCCTCAATGACAATACTCTTGGG 1951 || || ||||| ||||| || || || | | ||||| || | || |||||| | || Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1952 TCTCCACGGCCGCGCAGCGGCATCCCTTACATTCTCAGACACCCAGACCTCAAGTTCCTC 2011 || |||| | ||| |||| | || || || |||||| | | ||| ||| Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2012 TGGAACTTGATCGAATGAAGAAGAcaaaaaaggacaaacaaaaacctctaaaggaggtgc 2071 || || | | |||| | || | ||||||| ||||| | | | ||| || || Sbjct 6435 CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATA---TTGCAGGTGGAGC 6379 Query 2072 ---aaaaaTCCTATCTAAATTAGAATTCAAATTATGAAATTGGAAAATATAATCTTTTGG 2128 || ||| |||| ||||||| ||| || ||||||| | ||| |||||||||||| Sbjct 6378 CTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2129 GAGTTTTTCCCTTATTAT-ACTAAGTGCTGCTTCTTTAGAACCTGCGTTTAGGGCCTCTG 2187 | |||||||||| ||||| ||||| |||||| |||||| || | |||||||| |||| Sbjct 6318 GCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTG 6260 Query 2188 CTGCTGCATCATTTGCTGTCTGTTGACCTCCTC------TAGCAGATCGTCCATCGATCT 2241 | ||||||| || | |||||||| |||| | ||||||| |||||| |||| Sbjct 6259 CGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCT 6200 Query 2242 GAAACTGACCCCAGTCAATGTAATCACCGTCTTTCTCGATGTAGGACTTGACATCGGAGC 2301 | || | ||||| ||||| ||| |||| |||||||| || ||||| || | ||||| Sbjct 6199 GGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGC 6140 Query 2302 TGGACTTAGCTCCCTGGAAGTTTGGGTGGTATTGTGTGGAGGTATTAGGGTGAGTGAC-- 2359 |||| ||| ||||||| | |||||| ||| | ||||| || | | | ||| ||| Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTG---GAGAGACAA 6083 Query 2360 -ATCGAAATGTCTAGGGTTTCTGAACTGGCATTTACCTTTGAATTGGATGAGCGCGTGGA 2418 |||||| ||| || || | | | || |||| ||||||||| ||| |||||| Sbjct 6082 GATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGA 6023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8584934800080