Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005031.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq9745 560 2e-156 >seq9745 Length=7305 Score = 560 bits (620), Expect = 2e-156 Identities = 717/980 (73%), Gaps = 20/980 (2%) Strand=Plus/Minus Query 1608 CGAATTCTGCATTCTTTATAGCCCACTCTTTTAATGCCGAATTCTTCTCTTCGTCCAAGT 1667 |||| ||||||| | | |||||| || | || | ||||| |||||||| | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1668 ACTCTTTATATGATGATGTTGGG-CCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCT 1726 |||||||||| ||| |||||| |||||||||||||||||||| || || || || ||| Sbjct 6796 ACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCT 6738 Query 1727 TTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1786 |||| || || || || ||||| | | || ||||| || |||| |||||||||| Sbjct 6737 TTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1787 AATTCTTTAAAGTGCTTTAAGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCA 1846 ||||| ||||| || ||||| || | || || |||| |||||||||||||||||||||| Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1847 TCATTGCTGTATACCTTTGGGCTCAGATCTAAATGACCGCACAAATAATTATGTGGGCCT 1906 |||||| |||| |||||||| | ||| |||||||||| || ||||| ||||||||| Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCT 6558 Query 1907 AAAGAACGAGCCCACATCGTCTTCCCTGTACGGCTCTCACCCTCTATGACAATACTAACA 1966 || || | |||||| || || ||||| || | |||||| |||| || ||||| | | Sbjct 6557 AATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATA 6498 Query 1967 GGTCTCCATGGCCGCGCAGCGGCATCCCTTACGTTTTCGGAAACCCAGCACTCAAGTTCT 2026 |||| |||| | ||| |||| | |||||||| ||||||| | ||| Sbjct 6497 GGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC 6438 Query 2027 TCTGGAACTTGATCGAAAGAAGAAGAAAGAAATGGACAAACAAAAACCTCTGCACGAGGT 2086 || || || | | || | | || | ||| ||| ||||| | | |||| | || Sbjct 6437 TCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATAT---TGCAGGTGGA 6381 Query 2087 GTA---AAAATCCTATCTAAATTAGC-TTTAATATTATGATATTGAAAAATAAAATCTTT 2142 | || ||| |||| |||||||| |||||| | |||| | | ||| | ||||||| Sbjct 6380 GCCTGGAATATCATATCCAAATTAGCATTTAATCT-ATGAAAACGTAAATAATAATCTTT 6322 Query 2143 AGGGAGCTCCTCTCTAATAATAGCTAAAGCTGCTTCGGCTGAACCTGAATTTAGGGCCTT 2202 ||| | | || ||||| || |||| |||||| || || ||||||||||| | Sbjct 6321 TGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTC 6262 Query 2203 TGCAGCTGTGTCGTTAGCCGTCTGTTGACCTCCTCGAGCACTT------CTTCCGTCGAC 2256 ||| || ||||||| |||||||| |||| | | || ||||| || | Sbjct 6261 TGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCAT 6202 Query 2257 CTGGAATTCTCCCCATTCCAGTGTGTCTCCGTCCTTGTCGATATAAGACTTGACGTCGGA 2316 ||||||||||||||| || | ||| ||||||| ||| |||||||| ||||| |||| ||| Sbjct 6201 CTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGA 6142 Query 2317 GCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTAGGGGATGTAAG 2376 ||| |||||| ||||||| ||||| ||||||||||||| ||||||||| || || ||| Sbjct 6141 GCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAG 6082 Query 2377 GTCGAAGAATCTGTTATTTTGGCACTTGAATTTCCCTTCGAACTGGATAAGCACGTGCAG 2436 ||||||||||||||||| ||| || | ||||||||||| |||||||||||||| || Sbjct 6081 ATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Query 2437 ATGAGGGCTCCCATCTTCATGGAGTTCTCTGCAGATTTTGATGAATTTTTTATTTGTTGG 2496 | |||| || | |||||| ||||||||| || |||||| |||| || ||| ||| Sbjct 6021 ACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGG 5962 Query 2497 GGTGTTTAGGTTTTG--TAATTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCACTGTGGG 2554 ||| ||||||||||| ||||| || || ||||| ||||| || |||||||| || || Sbjct 5961 GGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGA 5904 Query 2555 TATGTGAGGAAATAAttttt 2574 ||||| || ||| |||||| Sbjct 5903 TATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8616636922680