Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005032.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq9745 542 5e-151 >seq9745 Length=7305 Score = 542 bits (600), Expect = 5e-151 Identities = 709/977 (73%), Gaps = 26/977 (3%) Strand=Plus/Minus Query 1627 CTGCATTTTTTAGTGCCCAGTCTTTGAGTGGAGAATTTTTATCCTCATCCAAGTACTCTT 1686 |||||||| | || |||||| || | | | || ||||| || || | |||||| Sbjct 6850 CTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTT 6791 Query 1687 TATACGACGATGTAGGTCCTGGATTGCATAGGAAGATTGTTGGGATCCCACCTTTAATTT 1746 |||| || | |||||||||||||| ||||||||||| || ||||| ||||||| || Sbjct 6790 TATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTT 6731 Query 1747 GAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATAAACTCTT 1806 || || || ||||| || | || ||||| || |||| ||||||||| || || | Sbjct 6730 AAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCT 6671 Query 1807 TAAAATGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTAC 1866 ||||||| |||| ||| | || || |||| ||||||||||||||||||||||||||| Sbjct 6670 TAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGT 6611 Query 1867 TGTACACCTTTGGACTAAGGTCCAGATGTCCACACAAATAATTATGTGGACCCATAGACC 1926 ||||| ||||| || | || ||| || || || ||||| ||||| || | || | Sbjct 6610 TGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATC 6551 Query 1927 TAGCCCACATCGTCTTCCCCGTCCTGCTATCTCCTTCTATGACAATACTCATGGGTCTCC 1986 ||||||| || || ||||| || || || ||||||| || |||||||| |||| Sbjct 6550 TAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGT 6491 Query 1987 CATTGCGCGCAGCGGCATCCCTAACATTCTCGGAAACCCAGTCTTCAAGTTCTTTTGGAA 2046 | | | ||| |||| | ||| || || ||||||||||| ||| | || | Sbjct 6490 GAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTA 6431 Query 2047 CTTGGTCGAAAGAAGAAGAAAGAAAAGGACAACGAAAAACCTCTAAAGGAGGTGCA---- 2102 | | || || | | || | ||||||| || || | || | ||||| | Sbjct 6430 CGTTGTTAAATGTACTGGATACAAAAGGAGAA------ACATATATTGCAGGTGGAGCCT 6377 Query 2103 --AAGATCCTATCTAAATTGGCATTTAAATTATGAAATTGTAAAACAAAATCTTTTGGAG 2160 || ||| |||| ||||| |||||||| ||||||| ||||| | |||||||||| Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2161 CTAACTCCCTAATTACAT-TAAGAGCCTCCGACTTACTTCCTGTGTTAATTGCTTTGGCG 2219 | |||||||||| | |||| || | | ||| || | || | |||| ||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2220 TAAGCATCATTGGCTGATTGTTGACCCCCTCTAG------CAGATCTTCCATCGATCTGA 2273 ||| ||||||| || ||||||||||||||||| | ||||||||||||| ||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2274 AACTCACCCCATTCGAGGGTGTCTCCGTCCTTATCAATATATGATTTGACGTCGGAGCTT 2333 || || ||||| || | || ||||||| ||| || ||||| || || |||| |||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2334 GATTTAGCTCCCTGTATGTTTGGATGGTAATGTGCTGACCTTGTTGGGGATACCAGATCG 2393 |||||| |||||||||||||||||||| |||||| |||||| ||||| || || |||||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2394 AAGAATCTCTTATTCGTGCATCTGTATTTCCCTTCGAACTGGATGAGCACATGGAGATGA 2453 |||||||| |||||||||||| |||| ||||||||||| ||||| ||||| |||||| || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2454 GGGCTCCCATCTTCGTGCAGTTCTCTGCAGATTTTGATGAATTTTTTGTTTGTTACAGTA 2513 || || | ||| || ||||||||| || |||||| |||| |||||| | ||| Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTA 5958 Query 2514 TCTAGCGTCTT---TATCTGGGCAAGGGTTTCCTCTTTTGTAAGACAGCATTTGGGATAT 2570 | ||| || || || || | || | |||||||||||||||| |||| | ||||||| Sbjct 5957 TTTAG-GTTTTGAATAATTGAG--AGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATAT 5901 Query 2571 GTAAGAAAATAATTTTT 2587 || |||||| |||||| Sbjct 5900 GTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8626147559460