Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005040.1 Length=5499 Score E Sequences producing significant alignments: (Bits) Value seq543737 107 7e-20 >seq543737 Length=543 Score = 107 bits (118), Expect = 7e-20 Identities = 191/279 (68%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 2109 ATAGCAAAAGAATTACTCAACTATCAATTTGGCGATGACCCTGAAGTAGTAATTGAATTT 2168 || || || || ||||| ||||||||| |||| | ||| ||| || | ||| Sbjct 199 ATTGCTAATGAGTTACTATTATATCAATTTAATAATGATTCAGAAAATGTATTTTATTTT 258 Query 2169 TTAACAACACTATATAATGTCATAGACAAAAGAGTTCCGAAATTAAATAGTATATGTATA 2228 |||||| |||| ||| | | || ||| || |||| |||| || | || ||| Sbjct 259 TTAACAGATCTATTAAATATTCTCGATAAACGAATTCCAAAATGTAACACATTAGCAATA 318 Query 2229 AAAAGTCCCCCTTCGGCAGGTAAGAACttttttttCGATGCCGTTGCATCGTATTTGCTT 2288 | ||| ||| ||||| || || | |||||| ||||| || || |||| ||| || Sbjct 319 CTAGCTCCACCTAAAGCAGGAAAAAATTATTTTTTTGATGCTGTCGCTTCGTTTTTCATT 378 Query 2289 TCATATGGTATGTTCGGTACAGCCAATAAAAACAATAATTTTTCGTGGGCAGACGGAGCG 2348 || ||| | | |||||||||||||||| ||||||||| ||| || | || Sbjct 379 AATTACGGTGTACTTGGTACAGCCAATAAAACTAATAATTTTGCGTTTATGGAAGCGGCA 438 Query 2349 GGTAAACGATTAGTTCTATGGAACGAACCAAACTATGAA 2387 || ||||||||||| || ||||||||||| || || ||| Sbjct 439 GGAAAACGATTAGTACTTTGGAACGAACCTAATTACGAA 477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17317252723600