Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005319.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq9745 616 3e-173 >seq9745 Length=7305 Score = 616 bits (682), Expect = 3e-173 Identities = 702/936 (75%), Gaps = 15/936 (2%) Strand=Plus/Minus Query 1652 TTTTTCTCTTCGTCCAAGAACTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGGAAG 1711 || || |||||||| | ||||||||||| || |||||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1712 ATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAG 1771 || ||||| || |||||||||| || || |||||||||||| | | || ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1772 TCCCTTTGGGCCCCCATGAATTCCTTGAAGTGCTTTAGGTAGTGGGGATCGACGTCATCA 1831 || |||| |||||||||||||||||| || || |||| || | ||||| |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1832 ATCACGTTGTACCAAGCATCATTACTGTAGACCTTAGGACTAAGGTCTAAGTGACCACAC 1891 || ||||||||||| |||||||| |||| || || || | || | ||||| || Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1892 AGGTAATTATGTGGACCCAAAGACCTAGCCCACATCGTCTTCCCCGTACGACTATCACCC 1951 | |||||| ||||| || || || |||||||| || || ||||| || | | ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1952 TCTATGACAATAGTTTTGGGTCTCAATGGCCGCGCAGCGGCACTCACCACATTCTCAGCA 2011 |||| || ||| | | |||| |||| | ||| ||||||||| || || || || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2012 GCCCATTCTTCAAGTTCATCTGGAACTTGGTCAAAAGAAGANNNNNAGAAAGGAGAAACA 2071 |||| |||| ||| || || || | || ||| | | |||||||||||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2072 TAAACCTCAACTGGGGGAGTAAATATCCTATCTAAATTAGCATTTAGATTATGAAATTGT 2131 || | || ||| | |||||| |||| ||||||||||||| ||||||| || Sbjct 6395 TATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGT 6336 Query 2132 AGTACATAATCTTTAGGTGCTAACTCCTTAATCA-CTCTAAGAGCCTCTGACTTACTGCC 2190 | ||||||||| || | ||| |||| | ||||||| || ||| ||| || Sbjct 6335 AAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCC 6277 Query 2191 TGCGTTAAGTGCTGCGGCGTAAGCATCATTGGCTGTCTGTTGACCCCCTCTTG------C 2244 | || || ||| | |||||| ||||||| || | |||||||||||||||| | Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2245 AGATCTGCCATCGATCTGAAACTCTCCCCAGTCGATGGTGTCTCCGTCCTTCTCCAGATA 2304 |||||| ||||| ||||| || |||||||| || || || ||||||| |||||| | ||| Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2305 GGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCT 2364 ||||| |||| ||||| |||||| ||||||| ||||| ||||||||||||| |||||| Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Query 2365 GGTTGGGGATACCAGGTCGAAGAATCTGTTATTTGTGCACTGGTATTTCCCTTCGAACTG 2424 |||||| || || || ||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 6096 GGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTG 6037 Query 2425 GATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGAAGTTCCCTGCAGACTCTT-ATGT 2483 ||| |||||||| ||| ||||||||| ||||| ||| ||| ||||| | |||| |||| Sbjct 6036 GATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAA-TCTTGATGT 5978 Query 2484 ATTTTTTGTTTACTGGGGTTTGTAAGTTTT--CTAATTGTGAGAGGGCTTCTTCTTTAGT 2541 |||| |||||||||||||| | || ||||| |||| |||||| ||||| ||||| || Sbjct 5977 ATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAAT--TGAGAGAGCTTCCTCTTTTGT 5920 Query 2542 TAGAGAGCATTTGGGATAAGTGAG-GAAATAGTTTT 2576 |||||||| | |||||| || || ||||| |||| Sbjct 5919 AAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8597615649120