Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005320.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq9745 526 4e-146 >seq9745 Length=7305 Score = 526 bits (582), Expect = 4e-146 Identities = 715/994 (72%), Gaps = 14/994 (1%) Strand=Plus/Minus Query 1585 TGGCTCGGTGATGCTGACGAAGACTGCATTTTTTATTGCCCACGACTTTAATGCAGTATT 1644 ||||| ||||| | |||||||||||||| | | ||||| ||||| | || | || Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1645 CTTTTCCTCGTCTAGGTATTCTTTATAGCTTGAGTTGGGCCCTGGATTGCATAGGAAGAT 1704 ||| || ||||| || | |||||||| ||||||||||| ||||||||||| |||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGAT 6754 Query 1705 AGCGGGAATGCCACCTTTAATTTGAACAGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTC 1764 | ||| || || ||||||| || || ||||||||||| || | || ||||| || Sbjct 6753 TGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATC 6694 Query 1765 CCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCTACGTCATCAAT 1824 |||| ||||||||||||||| |||||||| |||| || ||||||| |||| |||||| Sbjct 6693 ACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAAT 6634 Query 1825 GACGTTGTACCAGGCGTCATTATTGTATACCTTTGGACTCAAATCAAGATGACCACACAA 1884 ||||||||||||||| ||||| ||||| ||||| || | |||| |||||| || || Sbjct 6633 GACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAA 6574 Query 1885 ATAATTATGGCGTCCTAATGACCTGGCCCACATCGTCTTCCCCGTCCGACTATCGCCTTC 1944 ||||| || | |||||||| || ||||| || || ||||| || | | || ||||| Sbjct 6573 GTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTC 6514 Query 1945 GATAACTATACTTATTGGTCGTAATGGCCGCGCAGCGGAACTGACGACGTTCTCTGCAGC 2004 | ||||||||| || ||||| |||| | ||| || ||| || ||||| ||| || | Sbjct 6513 TACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAAC 6454 Query 2005 CCAGTCTTCGAGTTCCTCTGGAACTCGATCAAACGAAGAAGAAGAAAAAGGCGAAACATA 2064 |||||||| || ||| || || | ||| | | || |||||| |||||||| Sbjct 6453 CCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATA 6394 Query 2065 AACCTCCATCT-GAGGAGTAAAAATCCTATCTAAATTATTATTTAAATTATGAAATTGTA 2123 | | || | ||| || ||| |||| |||||| |||||| ||||||| ||| Sbjct 6393 TA-TTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTA 6335 Query 2124 AAACATAATCTTTAGGAGCTTTCTCCTTTAGTATATTGAGGGCCGAAGCTTTGGACCCTG 2183 || ||||||||| || ||| ||| | | ||| | | ||| | | ||| ||||| | Sbjct 6334 AATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAG 6275 Query 2184 AATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCCG 2237 |||| | || || || || | || || || ||||| ||| |||| | || | Sbjct 6274 AATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAG 6215 Query 2238 ATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTGTCCATGTAGG 2297 |||||||||| |||||||| |||| ||||| ||||||| || || || || | Sbjct 6214 ATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACG 6155 Query 2298 ACTTGACATCTGTTGAGCT---TTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACC 2354 |||| || | ||||| |||| || |||| ||||| ||||||||||||| ||||| Sbjct 6154 ACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2355 TGCTTGGGGATGTGAGATCGAAGAATCTTTGATTTTTACACTGGAATTTTCCTTCGAATT 2414 || |||| || |||||||||||||| | ||| | || | | || |||||||||| Sbjct 6097 TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATT 6038 Query 2415 GGATGAGCACATGCAGGTGAGGAGACCCATCTTCGTGTAATTCTCTGCAGATGCGGATAA 2474 |||| ||||| || || |||| || | ||| || ||||||||| || ||| Sbjct 6037 GGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGT 5978 Query 2475 ATAGTTTATTTACTGGGGTTTCTAGGGTTTTAATTTGGGAAAGTGCTTCTTCTTTAGTGA 2534 || || ||||||||||| | |||| ||| ||| || || ||||| ||||| || | Sbjct 5977 ATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAA 5918 Query 2535 GAGAGCAGTGTGGATATGTGAGGAAATAATTTTT 2568 |||||||||| |||||||| || ||| |||||| Sbjct 5917 GAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8572253951040