Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005321.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq9745 327 2e-86 >seq9745 Length=7305 Score = 327 bits (362), Expect = 2e-86 Identities = 620/911 (68%), Gaps = 26/911 (3%) Strand=Plus/Minus Query 1659 ACTCTTTATATGATGATGTTGGG-CCTGGATTGCATAGGAAGATAGTTGGGATTCCACCT 1717 |||||||||| ||| |||||| ||||||||||| |||||||| || || || || ||| Sbjct 6796 ACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCT 6738 Query 1718 TTAATTTGAATGGCTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1777 |||| || || || || ||||| | | || ||||| || |||| |||||||||| Sbjct 6737 TTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1778 AATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGCA 1837 ||||| ||||| || |||| ||| | || || |||| |||||||||||| ||||| ||| Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1838 TCATTACTGTATACTTTTGGGCTTAGATCAAGATGTCCACACAAATAATTGTGTGGTCCC 1897 ||||| |||| ||||||||||| |||| ||| || || || ||||||||||| || Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCT 6558 Query 1898 AGTGATCTGGCCCACATTGTTTTACCCGTACGACTATCACCTTCTATCACAATACTCTTG 1957 | |||||| ||||| |||||||| || || | | |||||||||| || |||||| | Sbjct 6557 AATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATA 6498 Query 1958 GGTCTCCACGGCCGCGCAGCGGCAC-CACTCACGTTCTCAGAAACCCACTCTTCAAGTTC 2016 |||| |||| | ||| ||||| ||| ||||| || |||||| |||| ||| Sbjct 6497 GGTCGGTGAGGCCTCCCAGAGGCACTCAC-AACGTTTTCTTCAACCCAGTCTTGAAGAAT 6439 Query 2017 TTCTGGAACTTGATCGAATGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTATAGGAGG 2076 || || || | | |||| | || | ||||||| ||||| | ||| | ||| Sbjct 6438 CTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA------TATATTGCAGG 6385 Query 2077 TGCA------AAAATCCTATCTAANNNNNNNNNNNNNNNATGAAACTGTAAAACGAAATC 2130 || | || ||| |||| || |||||| ||||| |||| Sbjct 6384 TGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATC 6325 Query 2131 TTTAGGAGCCTTCTCCTTTAATATATTGAGGGCCGCTGGTTTGGACCTTGCATTGATTGC 2190 ||| || || ||| | | ||| | | ||| |||| ||| |||| | ||| | || Sbjct 6324 TTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGC 6265 Query 2191 CTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCTGATCTTCCATC 2244 || || || | || || || ||||| ||| |||| | || ||||||||||| Sbjct 6264 TTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATC 6205 Query 2245 GATTTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGCTTTAACATC 2304 || ||||| |||| ||||| ||||||| || || || || | || || | Sbjct 6204 CATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTA 6145 Query 2305 TGTTGAGGTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGGT 2364 | || |||| ||||||| ||||| ||||||||||||| ||||||| |||| ||| Sbjct 6144 GGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGAC 6085 Query 2365 GAGATCGAAGAATCTGTTGTTTTGGCACTTGAATTTGCCTCCGAACTGTATGAGGACATG 2424 ||||||||||||||||| || ||| || | || ||| |||| || || || || || Sbjct 6084 AAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTG 6025 Query 2425 CAGGTGAGGAGACCCATCTCCGTGTAGTTCCCTGCAAATACGTATGAATAATTTATTAGT 2484 || |||| || | | | || ||| |||||||| ||| || || || Sbjct 6024 GAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTAC 5965 Query 2485 CGGGGTTGATAAGGCT--GAGATTTGGGAAAATGCCTCTTCTTTAGTAAGGGAGCAGTGT 2542 ||||| || | | | | ||| || | || || ||||| ||||| |||||||| Sbjct 5964 TGGGGTATTTAGGTTTTGAATAATTGAGAGA--GCTTCCTCTTTTGTAAGAGAGCAGTGG 5907 Query 2543 GGATAAGTGAG 2553 ||||| || || Sbjct 5906 GGATATGTTAG 5896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8613466710420