Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005330.1 Length=2675 Score E Sequences producing significant alignments: (Bits) Value seq9745 318 1e-83 >seq9745 Length=7305 Score = 318 bits (352), Expect = 1e-83 Identities = 661/970 (68%), Gaps = 33/970 (3%) Strand=Plus/Minus Query 1625 TCCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCAA-TCAAACGAGGCTTTCCGT 1683 ||| |||||||| || | ||||| || | ||| |||| || | ||| | |||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAG-GGCTTTCCGT 6716 Query 1684 ACTTGCAGTTTGTCTGCCATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTCAACT 1743 | | | || |||||| | || |||||| | | || || | ||||| || | Sbjct 6715 ATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAAT 6656 Query 1744 TTAGGTAATGCGGAGCGACGTCATCAATGACGTTATACTCCACTTGATCAGAATATACCT 1803 || ||||| | |||| |||||||||||| ||| | | || || | Sbjct 6655 ------AACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTT 6602 Query 1804 TTGAGTTGAAATCCAGATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGCCCACA 1863 ||| | | | ||| ||| || | |||||||| ||||||||||||| ||||||||| | Sbjct 6601 TTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATA 6542 Query 1864 TCGTCTTGCCAGTTCGAGAACCACCTTCAACAATTAAACTTATAGGCCTCAATGGCCGCG 1923 | || || ||||||| || ||||||| |||| || ||| ||||| | |||| | Sbjct 6541 TTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCC 6482 Query 1924 CAGCGGAACCCCTCCCAAAATAATCATCGGCCCACTCTTGCATCTCGTCTGGCACGTCAG 1983 ||| || || || ||| | || || |||| ||||| | || || |||| Sbjct 6481 CAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGT 6425 Query 1984 TGAATGAGGAGAGTCGAAACGGAGGGGCCCATGGCTCCGG---AGCCTTTGCAAAGATCC 2040 | |||| | | ||| |||| | || | || ||||| || ||| Sbjct 6424 TAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGG---AATATCA 6368 Query 2041 TATCTAAATTACTATTTAGATTGTGAAACTGGAA-TAGGAACTTTTCCGGCAACTTCTCC 2099 |||| |||||| ||||| | ||||| | || || || ||| ||| || ||| Sbjct 6367 TATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTT-TCC 6309 Query 2100 CGGATTATCTGCAAGGCGATTTCTTTGGAAGGGGCGTTCAAGGCTTCTGCGGCAGCGTCG 2159 | ||||||| ||||| | ||| || | || | |||||||||| | | || Sbjct 6308 CTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCA 6249 Query 2160 TTAGCTGTCTGGCAACCGCCTCTAGCACTT------CTACCGTCGATCTGGAATTCCCCC 2213 ||||| | || ||| ||||| | | || || || || ||||||||||| ||| Sbjct 6248 TTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCC 6189 Query 2214 CACTCGAGAGTATCTCCGTCCTTTTCGATGTAGGACTTAACGTCGGACGAGGATTTAGCT 2273 || || | |||||||||| ||| ||||| || ||||| |||| ||| ||||||| || Sbjct 6188 CAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCT 6129 Query 2274 CCCTGTATGTTAGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAGTCTG 2333 ||||||||||| ||||||||||||| |||||||||||| || || || ||||||| |||| Sbjct 6128 CCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTG 6069 Query 2334 TTATTCGTGCATTGGAATTTCCCCTGGAACTGTATAAGGACGTGGAGATGAGGCTCCCCA 2393 |||||||||||| | | ||||| | ||| || ||||| ||||||||| |||| |||| Sbjct 6068 TTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTG 6009 Query 2394 TTTTCGTGGAGC-TCTCTGCAGATTTTGATGAACTTCTTGTTAACTGGTGTCGATAAGCT 2452 ||||| | |||| |||||||| || |||||| | |||||||| ||||| || || | | Sbjct 6008 TTTTCAT-GAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTT 5950 Query 2453 CTG--TAATTGGGAAAGTGTCTCCTCTTTGGTTAAGGAGCACTGTGGATAAGTCAAGAAA 2510 || ||||| || || | |||||||| || | ||||| || ||||| || | ||| Sbjct 5949 TTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAA 5892 Query 2511 TAATTCTTGGCACTTATTTTAAAACGCTTTGGCGGTGGCATTTTTGTAA-TTAAGGGGTG 2569 ||| || | | || |||||| || |||||| ||||||| | || || || Sbjct 5891 ATATTTTTAGAAGAAATGCGAAAACGAGAACTCGTTGGCATATTTGTAAGTAAATGGATG 5832 Query 2570 TACCCCAATT 2579 | | |||||| Sbjct 5831 T-CACCAATT 5823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8372530578660