Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005338.2 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq9745 219 7e-54 >seq9745 Length=7305 Score = 219 bits (242), Expect = 7e-54 Identities = 280/386 (73%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 1597 GAACAATGGCTGTTCGAGGGTGATGAAGACCGCATTCTTGTAAGCCCACTCCTTCAATGA 1656 ||| |||||||| |||| |||||| ||||| || |||||| ||| | | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGC 6820 Query 1657 TTCGTTCTGTTCCTCATCAAGGAACTCTTTATAGGACGAACGTGGTCCTGGATTGCAAAG 1716 | |||||| || || ||||| ||||||||||| || ||||||||||||||||| Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1717 AAAGATGGTGGGTATCCCACCTTTAATTTGAGTGGGCTTACCGTATTTGATGTTGCTTTG 1776 ||||| ||||| ||||| ||||||| || | |||||| |||||| | | || || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1777 CCAGTCCATCTGGGCCCCCATAAACTCTTTAAAATGCTTTAGATAATGCGGATCAACGTC 1836 ||| || | | ||||||||| || || |||||||| |||| |||| |||||||||||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1837 ATCAATGACGTTATACCAAGCATCATTTGAAAATATCTTAGGGCTAAGATCCAGGTGTCC 1896 |||||||||||| ||||| |||||||| | | || ||||| | ||| || || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1897 ACACATGTAATTATGGACTCCTAATGACCGTGCCCATAACGTCTTCCCTGTTCTTGTTGC 1956 || | |||||| || |||||||| | ||||||| || ||||| ||||| | | Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1957 TCCTTCAACAACGATGCTCATCGGTC 1982 ||||| ||||| || ||||| |||| Sbjct 6519 ACCTTCTACAACTATACTCATAGGTC 6494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8645168833020