Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005347.1 Length=2786 Score E Sequences producing significant alignments: (Bits) Value seq9745 466 3e-128 >seq9745 Length=7305 Score = 466 bits (516), Expect = 3e-128 Identities = 696/980 (71%), Gaps = 12/980 (1%) Strand=Plus/Minus Query 1613 CGAAGGTTGCATTCTTTAGTGTCCAGCTCTTGAGTGCGTAATTCTTCGCCTCTTCTAGGA 1672 ||||| |||||| | || | |||| ||| | || ||||| | || || || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1673 ATTCTTTATATGAGGATGTTGGG-CCTGGATTGCAGAGGAAGATAGAGGGAATTCCGCCT 1731 | |||||||| || |||||| ||||||||||| |||||||| | ||| || |||||| Sbjct 6796 ACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCT 6738 Query 1732 TTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCAAAG 1791 |||| || || ||||| ||||| || | || ||||| || || | |||||| | | Sbjct 6737 TTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1792 AATTCTTTCCAGTGCTTTAGATAGTGCGGGTCGACGTCATCAATGACGTTATACCAAGCA 1851 ||||| || | || |||| ||| |||| || |||| |||||||||||| ||||| ||| Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1852 TCATTAGAATAAACCTTTGGACTTAAGTCTAAATGACCACATAAGTAATTATGTGGCCCT 1911 ||||| || ||||| |||| || ||||||| ||||||||||| ||||| ||| Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCT 6558 Query 1912 AATGACCTAGCCCAAACAGTTTTGCCGGTACGACTATCGCCCTCTACTACAATACTATTC 1971 ||||| |||||||| | ||||| || || | | || || ||||| || ||||| | Sbjct 6557 AATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATA 6498 Query 1972 GGCCTCCACGGCCGCGCAGCGGCACCCATGACATTCTCAGACACGCACTCTTCAAGTTCT 2031 || | |||| | ||| ||||| || || || || || || |||| ||| Sbjct 6497 GGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC 6438 Query 2032 TCTGGAACTTGAGTAAAAGAAGACGAAAGAAAAGGAGAAACATAAGGAGCTGGGGGCTCT 2091 || || || | |||| | | || | ||||||||||||||| || || || | Sbjct 6437 TCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCC 6378 Query 2092 TGAAAAATCCTATCTAAATTAGTTTTTAAATTATGATATTGAAAAATAAATTCTTTAGGG 2151 || || ||| |||| ||||||| ||||| ||||| | | ||| | | ||||| ||| Sbjct 6377 TGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGG 6318 Query 2152 AGTTTCTCCCTAATAATAGCCATAGCGGCTTCAGCGGAATCTGCATTTAAGGCCTCTGCT 2211 |||| |||||||| || | | || ||| || | | ||||| ||| ||||| Sbjct 6317 CGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2212 GCAGCGTCGTTAGC--ATT-TCGACAGCCTCCCCTA---GCACTTCTGCCGTCGACCTGG 2265 | | || ||||| ||| | ||| |||| || ||| ||| || || | |||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2266 AATACCCCCCATTCAAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTT 2325 ||| | ||||| |||| || ||||||| ||| ||||| || ||||| |||| |||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2326 GATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCG 2385 |||||| ||||||| ||||| |||||||||||||||||||||||||| || || || ||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2386 AAGAATCTGTTATTCGTGCACTGGTATTTCCCCTCGAACTGCATAAGCACGTGGAGATGA 2445 |||||||||||||||||||| ||| ||||| ||||| || ||||||||||||||| || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2446 GGTTCCCCATTTGTGTGCAACTCTCTGCAGACTTTGATGAATTTTTTATTTGTTGGGGTT 2505 ||||||| ||| || |||||||| | |||||| |||| || ||| |||||| Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTA 5958 Query 2506 GACAGATTTAGA--AGTTGCTCTAACGCTTCTTCTTTAGTGAGGGAGCATTTTGGGAAAG 2563 || ||| || | ||| | ||||| ||||| || || ||||| | || | | Sbjct 5957 TTTAGGTTTTGAATAATTG--AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATG 5900 Query 2564 TGAGGAAATAATTTTTGGAA 2583 | || ||| |||||| ||| Sbjct 5899 TTAGAAAAATATTTTTAGAA 5880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8724424139520