Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005348.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq9745 518 6e-144 >seq9745 Length=7305 Score = 518 bits (574), Expect = 6e-144 Identities = 729/1020 (71%), Gaps = 16/1020 (2%) Strand=Plus/Minus Query 1589 GAACAATGGCTCTGTGAGGGTGACGAAGGTCGCATTTTTTACTGCCCAAGCCTTCAGTGC 1648 ||| ||||||| |||||| ||||| |||||| | | ||||| | ||| | || Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGC 6820 Query 1649 TCTGtttttttCCTCGTCTAGAAATTCCTTATATGATGAAGTTGCCCCTGGATTGCAGAG 1708 | ||| || || ||||| ||||| || ||||| ||| | | ||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1709 GAAAATACTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTG 1768 ||| || |||| || || ||||||| || || |||||||||||| || | || || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1769 CCAGTCTCTTTGGGCCCCCATCAGCTCTTTAAAATGCTTTAAATAATGTGGGTCGACATC 1828 ||| || |||| ||||||||| | || |||||||| ||||||||| | || || || | Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1829 ATCAATGACGTTATACCATGCGTTATTGGAGTACACCTTTGGGCTTAAGTCTAGGTGCCC 1888 |||||||||||| ||||| || | |||| |||| |||||||||| || || || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1889 ACATAAATAATTATGTGGACCCAGAGAACGGGCCCATACAGTTTTGCCGGTCCGACTGTC 1948 ||||| ||||| ||||| || | || | ||||||| ||||| || || | | || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1949 ACCCTCTAAGACTATACTCTTGGGTCTCCATGGCCGCGCAGCGGAATCTCTTATA-TTAT 2007 ||| |||| ||||||||| | |||| |||| | ||| || | ||| | || | Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCA-CTCACAACGTTTT 6461 Query 2008 CTGCCACCCACTCTTCAAGTTCGTCTGGAACTTGAGTAAAAGNNNNNNNNNNNNNNGGGG 2067 || | ||||| |||| ||| || || || | |||| | || | Sbjct 6460 CTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAG 6401 Query 2068 ATACATATACTTCAGGAGGTTCCTGGAAGATTCTATCTAAATTGGATTTTAAATTATGAT 2127 | ||||||| | |||| || ||||||| || |||| ||||| | ||||| ||||| Sbjct 6400 AAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAA 6341 Query 2128 ATTG-AAATATATAATCTTTTGGGAGTTTTTCTTTAATTATAGCTAAAGCAGCTTCAGTT 2186 | | ||||| ||||||||||||| ||||||| ||||||| |||| || ||| | Sbjct 6340 AACGTAAATA-ATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTA 6282 Query 2187 GAACCTGCATTTAATGCCTCGGCGGCTGCGTCGTTAGCTGTTTGGCAGCCTCCTCTAG-- 2244 || || | ||||| || || ||| | || ||||| | ||| || ||||| | Sbjct 6281 GACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTA 6222 Query 2245 ----CAGATCTGCCGTCAATTTGGAATTCTCCCCATTCGAGAGTGTCTCCGTCCTTATCG 2300 ||||||| || || || |||||||||||||| || | || ||||||| ||| ||| Sbjct 6221 GTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCG 6162 Query 2301 ATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTACATTCGGATGGAAATGTGCT 2360 ||||| ||||| |||| ||||||||||||| ||||||||| || ||||||||||||| | Sbjct 6161 ATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTT 6102 Query 2361 GACCGGGTTGGGGATACCAGGTCGAAGAATCGTTGATTTGTGCAGTTGTATTTACCCTCG 2420 |||| |||||| || || || |||||||||| | ||| ||||| |||| || || ||| Sbjct 6101 GACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCG 6042 Query 2421 AATTGGATAAGCACGTGGAGATGATGTTCCCCATCTTCGTGGAGTTCTCTACAGATTTTA 2480 ||||||||||||||||||||| || |||||| | ||| || |||||| || || || Sbjct 6041 AATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTG 5982 Query 2481 ATGAATTTTTTATTTGTGGGAGTCTGTAGGTTCTG--TAATTGAGAAAG-TGCCTCTTTT 2537 ||| |||| || ||| || || | |||||| || ||||||||| || | |||||||| Sbjct 5981 ATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTT 5922 Query 2538 TTAGTAAGAGAGCATTGGGGATAAGTGAGGAAGTAATTCTTGGCTTTAATACTAAAACGA 2597 ||||||||||| |||||||| || || || ||| || | ||| | ||||||| Sbjct 5921 ---GTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGA 5865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8683211380140