Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005635.1 Length=2728 Score E Sequences producing significant alignments: (Bits) Value seq9745 360 3e-96 >seq9745 Length=7305 Score = 360 bits (398), Expect = 3e-96 Identities = 650/937 (69%), Gaps = 29/937 (3%) Strand=Plus/Minus Query 1660 CTTCGTCCAAGTACTCTTTATAAGAGGATTTGGGACCTGGGTTACAGAGAAAGATGGTGG 1719 ||||||| | ||||||||||| || ||||| ||||| || || || ||||| |||| Sbjct 6808 CTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGG 6749 Query 1720 GGATTCCACCTTTAATGTGTGTGGGCTTTCCGTATTTTACATTTGACTGCCAGTCTCTTT 1779 | || || ||||||| | ||||||||||||| || ||| ||||||| || |||| Sbjct 6748 GCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTT 6689 Query 1780 GCGCGCCCATGAATTCTTTGAAATGTTTCAAATAATGTGGATCAACGTCATCGATGACGT 1839 || ||||||||||| || |||||||| |||||| | |||||||||| ||| ||||||| Sbjct 6688 TGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGT 6629 Query 1840 TATACCATGCCTCGTTAGAGAAAATCTTATCGTTCAGATCCAAATGGCCGCAAAGATAAT 1899 | ||||| || || || | | | || | | | ||| |||| ||||| | |||| Sbjct 6628 TGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAAT 6569 Query 1900 TATGAGGACCCAATGCTCTTGCCCACATGGTTTTACCCGTCCGACTATCACCTTCAATCA 1959 | || || || |||| ||| ||||| || ||||| || || | | |||||||| | | Sbjct 6568 TGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAA 6509 Query 1960 CTATACTTATGGGTCTCTCCGGCG-CGCAGCGGGATCTTACA---TTTTCTGAAGCCCA- 2014 ||||||| || |||| | ||| | ||| || | || ||| |||||| | |||| Sbjct 6508 CTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCA-CTCACAACGTTTTCTTCAACCCAG 6450 Query 2015 ---TGAAGAAATATATTCTGGGACTCTACTAAATGTA-TCTATACTATAAGGCGACACAT 2070 ||||||| || || || | |||||||| | |||| | |||| || |||| Sbjct 6449 TCTTGAAGAATC----TCCGGTACGTTGTTAAATGTACTGGATACAA-AAGGAGAAACAT 6395 Query 2071 ATGCCTGAATAGGCGAAATGAAAATCTTATTCAAATTACAATTTAAATTATGAAATTGTA 2130 || | || | ||| ||| ||| ||||||| |||||| ||||||| ||| Sbjct 6394 ATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTA 6335 Query 2131 AAATATAATCTTTTGGAGCCTTCTCTTTCAATATATCGAGGGCCTGTGATTTGGATCCAC 2190 || |||||||||||| || || | | ||| || | ||| || ||| || ||| Sbjct 6334 AATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAG 6275 Query 2191 AGTTGAGTGCCTCGGCATACGCGTCGTTTGCAGACTGTTTACCTCCTCTAG------CCG 2244 | || || || || || || | || || || || |||| ||| ||||| | | | Sbjct 6274 AATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAG 6215 Query 2245 ATCTTCCATCGATTTGGAAGGTTCCATGATCAAGGACGTCTCCGTCTTTCTCCATGTATT 2304 |||||||||| || ||||| ||| ||||| ||||||| ||||| || || Sbjct 6214 ATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACG 6155 Query 2305 GCTTAACATCTGAGCAGCTTTGAGCTGCCTGAATGTTCGGATGGAAATGTGTTGACCTGG 2364 ||| || | |||| | || | || |||| ||||| |||||||||||||||||||||| Sbjct 6154 ACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGG 6095 Query 2365 TTGAGGATACCAGGTCGAAGAACCTTTGGTTACGTGTGTG-GAATTTGCCTTCGAATTGC 2423 ||| || || || |||||||| || | || |||| || | | || ||||||||||| Sbjct 6094 TTGGAGAGACAAGATCGAAGAATCTGTTATT-CGTGCATGTGTACTTCCCTTCGAATTGG 6036 Query 2424 AGCAGAACATGGAGATGAGGTTCTCCATTCTCATAAGC-TCTCGGCAGATGCGAATGAAT 2482 | || || |||||| ||||||| | || |||| ||| |||| ||| || ||| || Sbjct 6035 ATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTAT 5976 Query 2483 CTTCTTGTTAACT--GGTGTTGACAAATCTAATAGTTGCTCCAGTGTGTCCTCTTTAGTT 2540 |||||||| ||| ||| || | | |||| ||| || | |||||||| || Sbjct 5975 -TTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTG--AGAGAGCTTCCTCTTTTGTA 5919 Query 2541 AGAGGACAGCGAGGATATGTAAGGAAATAGTTTTTAG 2577 |||| ||| | |||||||| || ||| ||||||| Sbjct 5918 AGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8540551828440